PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00409.1.g00370.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 748aa MW: 82757.5 Da PI: 4.7891

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00409.1.g00370.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.5	1.3e-53	507	635	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratk 79 lppGfrFhPtdeelv++yLk+k++g ++el ++i+evd+yk+ePw+L k + +++ ewyfF +rd+ky++g r+nrat+ Zmw_sc00409.1.g00370.1.am.mk 507 LPPGFRFHPTDEELVNYYLKRKIHGLEIEL-DIIPEVDLYKCEPWELAdKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATR 586 79**************************.99**********85335566888******************* PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +gyWk+tgkd++vl+++g+ +g+kktLv+y+grap+g++t Wvmheyrl Zmw_sc00409.1.g00370.1.am.mk 587 AGYWKSTGKDRRVLHHGGRRIGMKKTLVYYRGRAPQGVRTGWVMHEYRL 635 *********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03478	5.1E-6	315	350	IPR005174	Domain unknown function DUF295
SuperFamily	SSF101941	4.45E-64	500	658	IPR003441	NAC domain
PROSITE profile	PS51005	60.323	507	658	IPR003441	NAC domain
Pfam	PF02365	5.3E-29	508	635	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 748 aa Download sequence Send to blast
MAQEQARLGW SSGLPEPEIL ESIGKGLASG HDAASFRSAC VSWRAALPFK SFAPLLLLPF 60 GPESESVTFY SVSEEEIDSK PLPDDVRGRE PCGASRGWLA LMDEAASVML LNPFTGARVE 120 LPPADEHAAA ASSGTRVSKV DGRWVLLPDD GYGNAEAVRV INLEEMRDVF IREIVLSAPP 180 YAGRECIAMA VLPNSTMVAF CRVGVDSAWT LLDTNLECSV ACIVHCQERI FAVDITGDIS 240 ICNFNTGAGA PPTATPLPSL SAPEGVCNRS YLESNGELHI VGVMVTTFHE TKTFTSNIVV 300 YKCDFLLDQT PVWSKVDDIG DMTLLVSKDF SESFGGASVS KYKKNSIYFS EALYGDPKIS 360 AIRYEIVDIA TETREVVHVN GNMDPLEALC WFRPNIWMGA ELARYKYDEE EDSTKETDVI 420 KIKGAWTIKS SRGEAGGPPD RWSPWESVLI RLSVRQCPKR SGASKVSFFA ISFLSATADV 480 QPVRHQYVVR SPPPTLRERY MAARAGLPPG FRFHPTDEEL VNYYLKRKIH GLEIELDIIP 540 EVDLYKCEPW ELADKSFLPS RDPEWYFFGP RDRKYPNGFR TNRATRAGYW KSTGKDRRVL 600 HHGGRRIGMK KTLVYYRGRA PQGVRTGWVM HEYRLDDKDA EDTMPMQDTY ALCRVFKKNA 660 ICTEVDDLQA AQCNMALLEG ACQQLLPSGS QEYETPSPDV PVGSTSGGAD VEDADKDDSW 720 MQFISDDAWC SSSADGAEES ASCVALAS

Sequence ? help Back to Top

Protein Sequence Length: 748 aa Download sequence Send to blast

MAQEQARLGW SSGLPEPEIL ESIGKGLASG HDAASFRSAC VSWRAALPFK SFAPLLLLPF  60
GPESESVTFY SVSEEEIDSK PLPDDVRGRE PCGASRGWLA LMDEAASVML LNPFTGARVE  120
LPPADEHAAA ASSGTRVSKV DGRWVLLPDD GYGNAEAVRV INLEEMRDVF IREIVLSAPP  180
YAGRECIAMA VLPNSTMVAF CRVGVDSAWT LLDTNLECSV ACIVHCQERI FAVDITGDIS  240
ICNFNTGAGA PPTATPLPSL SAPEGVCNRS YLESNGELHI VGVMVTTFHE TKTFTSNIVV  300
YKCDFLLDQT PVWSKVDDIG DMTLLVSKDF SESFGGASVS KYKKNSIYFS EALYGDPKIS  360
AIRYEIVDIA TETREVVHVN GNMDPLEALC WFRPNIWMGA ELARYKYDEE EDSTKETDVI  420
KIKGAWTIKS SRGEAGGPPD RWSPWESVLI RLSVRQCPKR SGASKVSFFA ISFLSATADV  480
QPVRHQYVVR SPPPTLRERY MAARAGLPPG FRFHPTDEEL VNYYLKRKIH GLEIELDIIP  540
EVDLYKCEPW ELADKSFLPS RDPEWYFFGP RDRKYPNGFR TNRATRAGYW KSTGKDRRVL  600
HHGGRRIGMK KTLVYYRGRA PQGVRTGWVM HEYRLDDKDA EDTMPMQDTY ALCRVFKKNA  660
ICTEVDDLQA AQCNMALLEG ACQQLLPSGS QEYETPSPDV PVGSTSGGAD VEDADKDDSW  720
MQFISDDAWC SSSADGAEES ASCVALAS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-49	507	660	17	167	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-49	507	660	17	167	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-49	507	660	17	167	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-49	507	660	17	167	NO APICAL MERISTEM PROTEIN
3swm_A	4e-49	507	660	20	170	NAC domain-containing protein 19
3swm_B	4e-49	507	660	20	170	NAC domain-containing protein 19
3swm_C	4e-49	507	660	20	170	NAC domain-containing protein 19
3swm_D	4e-49	507	660	20	170	NAC domain-containing protein 19
3swp_A	4e-49	507	660	20	170	NAC domain-containing protein 19
3swp_B	4e-49	507	660	20	170	NAC domain-containing protein 19
3swp_C	4e-49	507	660	20	170	NAC domain-containing protein 19
3swp_D	4e-49	507	660	20	170	NAC domain-containing protein 19
4dul_A	5e-49	507	660	17	167	NAC domain-containing protein 19
4dul_B	5e-49	507	660	17	167	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025815544.1	1e-170	F-box protein SKIP23-like
TrEMBL	A0A2S3HVM3	1e-168	A0A2S3HVM3_9POAL; Uncharacterized protein
STRING	Pavir.Ea01294.1.p	1e-164	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5428	2	2