PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00418.1.g00100.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 344aa    MW: 36929.1 Da    PI: 4.9644
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00418.1.g00100.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.6e-10133177655
                                   HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                      Er+RR r+++++ eLr l+P+      +K++Ka+i   Av Y+k+Lq
  Zmw_sc00418.1.g00100.1.am.mk 133 IVSERKRRVRMKEKLYELRALVPNI-----TKMDKASIIADAVVYVKNLQ 177
                                   568*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-15124193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.43E-13124177No hitNo description
PROSITE profilePS5088815.129127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15129192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-11133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-8133177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034756Biological Processregulation of iron ion transport
GO:0071281Biological Processcellular response to iron ion
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0071732Biological Processcellular response to nitric oxide
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MDHDLLRLLQ LPSQDHLMVN SGFFSVAGGG AVDVHVPNSD DAGFVVPAAA LAGLDDCGWM  60
EDLMHLGDEL FVGDDNNAGG TREYQPSLCG DGSPEDPPPS ASLDGGEGSP PSVEEQDDGS  120
AATRKRRDRS KTIVSERKRR VRMKEKLYEL RALVPNITKM DKASIIADAV VYVKNLQSHA  180
RKLKEEVATL EATPRSPAGR QAQQQQQQQP KQHAAAGRRQ PNRGGPPADD GDDEEENSTG  240
PAGARVTHVG AAQVGDGRFF VTVECERRDG VAAPLCSAVE SLACFRVESS SLGRSGPDRI  300
VSTHVLKASD QLGDATIGER TVRLWMMAAL LKEGFQPEAR VEMS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124139KRRDRSKTIVSERKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825747.11e-128transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
TrEMBLA0A3L6PRK61e-129A0A3L6PRK6_PANMI; Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
STRINGPavir.J29678.1.p1e-127(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55463057