PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00418.1.g00140.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 493aa MW: 54846 Da PI: 9.3746

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00418.1.g00140.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	77.2	2.1e-24	359	409	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k r+rWt++LHerFv++ + LGG+ekAtPk il+lm+ gLt++h+kS LQ Zmw_sc00418.1.g00140.1.am.mk 359 KMRIRWTQDLHERFVDCANMLGGAEKATPKGILNLMNHAGLTIYHIKSRLQ 409 679************************************************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.33E-11	357	410	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-21	358	410	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.2E-16	359	410	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-5	363	410	IPR001005	SANT/Myb domain
Pfam	PF14379	3.6E-16	408	452	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MAVNATACHR KPRLLPPLRT NTEAAYGTRR RRLRCRLLGH GHGAEQVHRS RGMGLLRLVA 60 LKQNCPLHSN GKSDISPLPK KPTVTGCASG GRELTRASCN SGRHERPMIL PCLLWAFARK 120 LADTKKNIKL RDYNYGSSLS DRPLLSGTAP WLSFYAGLVS SVPQRHAAAG SLMHNEYISS 180 ARSVLATQDN SVVGFDNSEF SFEHLLGMAP LDRALGSTTP STVVALETAP FGRSPETEQL 240 YRSVDPPLLR DDSVMTYHVP PLHLDAAESP PVKMPLQQLD RRQGVFQNAS TDKLIVRDHA 300 ILSISPHVRS GDCTLLPAME APSVRSTMEN PLPRIWNINA PAIHTGTIAM ATRQGVPSKM 360 RIRWTQDLHE RFVDCANMLG GAEKATPKGI LNLMNHAGLT IYHIKSRLQE ALRVQLDLQR 420 RLYEQIKIQT NLQLRIEAQG KVLQKMLEEQ LEASRSMLEL DPWEEMMRGV GAVFPLDGEQ 480 QEDVFDDVEL LQT

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MAVNATACHR KPRLLPPLRT NTEAAYGTRR RRLRCRLLGH GHGAEQVHRS RGMGLLRLVA  60
LKQNCPLHSN GKSDISPLPK KPTVTGCASG GRELTRASCN SGRHERPMIL PCLLWAFARK  120
LADTKKNIKL RDYNYGSSLS DRPLLSGTAP WLSFYAGLVS SVPQRHAAAG SLMHNEYISS  180
ARSVLATQDN SVVGFDNSEF SFEHLLGMAP LDRALGSTTP STVVALETAP FGRSPETEQL  240
YRSVDPPLLR DDSVMTYHVP PLHLDAAESP PVKMPLQQLD RRQGVFQNAS TDKLIVRDHA  300
ILSISPHVRS GDCTLLPAME APSVRSTMEN PLPRIWNINA PAIHTGTIAM ATRQGVPSKM  360
RIRWTQDLHE RFVDCANMLG GAEKATPKGI LNLMNHAGLT IYHIKSRLQE ALRVQLDLQR  420
RLYEQIKIQT NLQLRIEAQG KVLQKMLEEQ LEASRSMLEL DPWEEMMRGV GAVFPLDGEQ  480
QEDVFDDVEL LQT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-15	359	410	1	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-15	359	410	1	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-15	359	410	1	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-15	359	410	1	52	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	29	36	RRRLRCRL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822779.1	1e-124	probable transcription factor KAN2
Refseq	XP_025822780.1	1e-124	probable transcription factor KAN2
TrEMBL	A0A2T7D1E3	1e-123	A0A2T7D1E3_9POAL; Uncharacterized protein
STRING	Si022099m	1e-114	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6933	37	51