PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00429.1.g00210.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 584aa MW: 63619.8 Da PI: 6.5104

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00429.1.g00210.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.8	1e-09	327	369	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 + ErrRR+++N++++ Lr+ +P + K++ a+i A+e++k+L Zmw_sc00429.1.g00210.1.am.mk 327 MSERRRRKKLNDRLFMLRSAVPRiS------KMDRASIISDAIEHLKEL 369 78*******************66......**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	7.91E-12	318	372	No hit	No description
SuperFamily	SSF47459	8.24E-15	320	396	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.424	320	369	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.4E-11	326	375	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-7	327	369	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.3E-14	327	382	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 584 aa Download sequence Send to blast
MLWQLDNPSW MQDECQEQGQ QQQHAPPPTT GPGMILAQGQ EEQNLMAQDA ATAGNMRFRT 60 HGMLDNDWYL DGMAAGTQLS LLPAQPAQAG GSTFTSAGSQ MFSPFNMGTA GPFDLHEFDI 120 GLSDRGGNDG DLSSIVGNAS NSSSLSLIPS GNAGSLGSFG GFATAPMQMQ EFSSFGRFDV 180 FNNGPGSSSM PPPASASLTT PLAARSKAAL LRPLEIIPPV DAQPLLFEKR AVRRNTGEEE 240 HDKKHKAAVS VGVSSGDDTL LLDDGGDDGL RIDASRLNYD SEDIKGIEES DKKNTKDANA 300 NTNSTVTADC TGDSKCRKKS LQAKNLMSER RRRKKLNDRL FMLRSAVPRI SKMDRASIIS 360 DAIEHLKELT QKSSDLQNEL ASFPPTASPL PPTPTSFHPL TPMPPSLLSR VKEELCPTTL 420 PVPGPTAQHP SIEVGITEGR VVNIHMFCAR RPGLPMSAMN AIEGLGLDVQ EAVFSCFNSF 480 SMDIFKTEES KSHLPYDEDY TRATMLEQLN FAGKALDCCR RKSRPYCCTP PGSEAWPRKP 540 RRLNHQLQRT LKLPVFLRFV CSRFGTCMLR FSPDPNHQSL VVSV

Sequence ? help Back to Top

Protein Sequence Length: 584 aa Download sequence Send to blast

MLWQLDNPSW MQDECQEQGQ QQQHAPPPTT GPGMILAQGQ EEQNLMAQDA ATAGNMRFRT  60
HGMLDNDWYL DGMAAGTQLS LLPAQPAQAG GSTFTSAGSQ MFSPFNMGTA GPFDLHEFDI  120
GLSDRGGNDG DLSSIVGNAS NSSSLSLIPS GNAGSLGSFG GFATAPMQMQ EFSSFGRFDV  180
FNNGPGSSSM PPPASASLTT PLAARSKAAL LRPLEIIPPV DAQPLLFEKR AVRRNTGEEE  240
HDKKHKAAVS VGVSSGDDTL LLDDGGDDGL RIDASRLNYD SEDIKGIEES DKKNTKDANA  300
NTNSTVTADC TGDSKCRKKS LQAKNLMSER RRRKKLNDRL FMLRSAVPRI SKMDRASIIS  360
DAIEHLKELT QKSSDLQNEL ASFPPTASPL PPTPTSFHPL TPMPPSLLSR VKEELCPTTL  420
PVPGPTAQHP SIEVGITEGR VVNIHMFCAR RPGLPMSAMN AIEGLGLDVQ EAVFSCFNSF  480
SMDIFKTEES KSHLPYDEDY TRATMLEQLN FAGKALDCCR RKSRPYCCTP PGSEAWPRKP  540
RRLNHQLQRT LKLPVFLRFV CSRFGTCMLR FSPDPNHQSL VVSV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	316	334	RKKSLQAKNLMSERRRRKK
2	328	335	ERRRRKKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002449578.1	1e-150	transcription factor SCREAM2
TrEMBL	A0A482KF71	1e-170	A0A482KF71_9POAL; ICE1
STRING	Sb05g019530.1	1e-149	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1646	37	101