PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00436.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 330aa MW: 35894.6 Da PI: 7.827

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00436.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.7	5.7e-05	69	87	2	20
HHHHHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsaf 20 r +h++ E+rRR++iN+++ Zmw_sc00436.1.g00010.1.sm.mkhc 69 RSKHSATEQRRRSKINDRL 87 889**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.8E-4	66	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.11E-7	67	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.31E-4	69	100	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.0E-5	88	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MPLDRKVGGG FTEAGSRSSG SGGFDDDDGH AARREVSSSL KELTVRVEET KGGSCSGSAG 60 TDKLPNTPRS KHSATEQRRR SKINDRLVIE YIRFLQEKVQ KYEVSHHEWN QENAKVAPWS 120 NIYFRSFWKN AQNKDEMNGD TAPDPSQVIK NGSSLPFPFA VKPADGNNAA PFEIASAGHE 180 LAEANQKGCV SYKEADTASN IPNNVASQQA AHLMKSLPTE DHRVNSEMLK DPELAIDEGT 240 ISLSSQYSQG LLATLNHALQ NSGIDLSQAS ISVQINLGKR AIKRPAPGAN SISKELTSQA 300 THGQAIWHQQ KSGDGALEHS QVTKRHKSDR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822755.1	1e-160	transcription factor BIM2-like isoform X2
TrEMBL	A0A2T7D8X5	1e-167	A0A2T7D8X5_9POAL; Uncharacterized protein
TrEMBL	A0A3L6RH25	1e-167	A0A3L6RH25_PANMI; Transcription factor BIM1-like
STRING	Pavir.J38910.1.p	1e-156	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP762	37	128