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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Zmw_sc00436.1.g00300.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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| Family | NF-YC | ||||||||
| Protein Properties | Length: 311aa MW: 34188.9 Da PI: 7.0869 | ||||||||
| Description | NF-YC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NF-YC | 161 | 1.8e-50 | 1 | 101 | 4 | 101 |
NF-YC 4 sfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaa 81
+fw++q i+ +tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt r w haeenkrrtl+ksdiaa
Zmw_sc00436.1.g00300.1.sm.mk 1 MFWAEQyreIDAVTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKSDIAA 81
69**99888999********************************************************************* PP
NF-YC 82 avtrtdifdflvdivprdel 101
av+rt++fdflvdivpr+e
Zmw_sc00436.1.g00300.1.sm.mk 82 AVARTEVFDFLVDIVPREED 101
*****************975 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF47113 | 3.86E-29 | 8 | 92 | IPR009072 | Histone-fold |
| Pfam | PF00808 | 4.5E-21 | 20 | 83 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
| Gene3D | G3DSA:1.10.20.10 | 2.4E-36 | 21 | 98 | IPR009072 | Histone-fold |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046982 | Molecular Function | protein heterodimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 311 aa Download sequence Send to blast |
MFWAEQYREI DAVTDFKNHN LPLARIKKIM KADEDVRMIA AEAPVVFARA CEMFILELTH 60 RGWAHAEENK RRTLQKSDIA AAVARTEVFD FLVDIVPREE DKDAEAAAAA VGAGIPHPAA 120 GMPTNDPMAY YYVQPQNPFQ IPERERMNLP DVKAAAATTS KQAVTTFCWH HRSGPHAPIR 180 VECEIGSHEG EAEMVRGGLK RVDRCGFGAR NGGLRQGDCA VSNGRVAERF ISEGGNGQIL 240 GGPAGRESPR APLRDEALQR RGQWTVGTAT RVPSAMALFS FNQFTLACLW TEHCVSILAQ 300 AAALATAHHF M |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5g49_B | 2e-51 | 6 | 98 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 70 | 76 | RRTLQKS |
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP3856 | 36 | 76 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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