PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00439.1.g00050.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 157aa    MW: 17168.6 Da    PI: 10.9096
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00439.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.52.9e-172271355
                           AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                  + GVr+++ +gr++AeIrd + ng  +r++lg+f++ e Aa a+++a+++ +g
  Zmw_sc00439.1.g00050.1.am.mk 22 FIGVRRRP-WGRFAAEIRDSTRNG--ARVWLGTFDSVEAAAMAYDQAALSARG 71
                                  57******.**********44465..***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.4E-252185IPR001471AP2/ERF domain
PROSITE profilePS5103219.9542179IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-242276IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-182276IPR016177DNA-binding domain
PRINTSPR003677.0E-82233IPR001471AP2/ERF domain
PfamPF008475.9E-132271IPR001471AP2/ERF domain
PRINTSPR003677.0E-84561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
LHRLPVIQHY LQRPSSPCKE AFIGVRRRPW GRFAAEIRDS TRNGARVWLG TFDSVEAAAM  60
AYDQAALSAR GPAAVLIVPV ERSSVAAGGG TPVLQLKSRH SKRKRRKKSE TAAAAAAANG  120
SAIGRNKSVM SEQRRFVVEL EDLGADYLEE LLRISEC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-2222811574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101106KRKRRK
2101107KRKRRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959050.14e-43ethylene-responsive transcription factor 1
SwissprotA0A3Q7I5Y94e-34ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLK4A2J11e-41K4A2J1_SETIT; Uncharacterized protein
STRINGPavir.Ba02374.1.p4e-44(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]