PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00441.1.g00100.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 525aa    MW: 57578.5 Da    PI: 10.6824
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00441.1.g00100.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.71.5e-231056248
                                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
                        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                                  rien   rqvtf+kRr g+lKKA ELS+LCda++ vi+fs++gk+y+
  Zmw_sc00441.1.g00100.1.am.mk 10 RIENPVHRQVTFCKRRMGLLKKARELSILCDADIGVIVFSPHGKIYD 56
                                  8********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.833161IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-34160IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.5E-24161IPR002100Transcription factor, MADS-box
CDDcd002654.81E-33265No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-24323IPR002100Transcription factor, MADS-box
PfamPF003192.9E-231055IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-243859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MARGKVQMRR IENPVHRQVT FCKRRMGLLK KARELSILCD ADIGVIVFSP HGKIYDLATN  60
GSVATGTEAP DVRSGCVHAA RARGPKPSSS SLRRRSEREQ ELIDQQAFKI RSINRSIANP  120
IDRRADRSGP VLRKYMHGTG PSTHRHASSS HGGSGVCTSA TGRRLINYWA FGRRRHCCSY  180
IAFVTHDVRA CLDQRDASTI GTYRQGPSYQ QGPATTTVGK PWTERWRRSG AKSIGRRATR  240
ADAVLSLDRA PGRPVERLLS RPEARRRAHG PPPATVFDPI PGALAAGFMR NPPGPACSRA  300
LQPCRDPRMT RGRDSGHKQS SWSPGAASTA RGFVFLRATC LAGVVHASCL DSTVHHHAWR  360
SGSMPAKLAL PQKLRSRCPS STCCGLSPFR VPCVVPGRLS QELGTVPLQT VSMTRTHTDR  420
DPTSNHATDL LLPTITSGQR PQQQYRGARC THQDLCEFGE LRAVPAGRTV ELAGSDEEFD  480
LDLGSPRLWA EMAEAMLLDP PRLDMGVSDM EVTQCWSHGS LWDAC