PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00443.1.g00260.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 309aa MW: 34132.9 Da PI: 6.4614

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00443.1.g00260.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.7	1.2e-09	125	172	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L+ l+P + +k Ka iL + ++Y++sLq Zmw_sc00443.1.g00260.1.sm.mk 125 SHSLAERVRRERISERMRVLQALVPGC----DKVTGKALILDEIINYVQSLQ 172 8***********************9....555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.01E-17	119	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.41E-11	119	176	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.4E-16	121	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.656	121	171	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-6	125	172	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.7E-10	127	177	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MASFPRLPQQ MEHGHTNASH SLPSYFFYHH GGAGTADSAI PEDASMETSS VVLDTSPQRT 60 ASVDKKRKPG EDGASHCSAH SKNSKEESKK RGGKRERNRK EEMEEEEAPK GYIHVRARRG 120 QATDSHSLAE RVRRERISER MRVLQALVPG CDKVTGKALI LDEIINYVQS LQNQVEFLSM 180 RIASLSPVLY GFGMDSDAFG DQTQKIEGML HHHHEALAMP ASILNRAPPQ SIMVTSTSTS 240 SASYEVHGDG GISFHQDPIP NHCDPAHEAD GPARSNNLQD GGSYIVQTVG DVPRQELFDQ 300 VEEIILRWS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025803717.1	1e-137	transcription factor bHLH137-like
TrEMBL	A0A2S3H1M2	1e-136	A0A2S3H1M2_9POAL; Uncharacterized protein
TrEMBL	A0A2T7EUH4	1e-136	A0A2T7EUH4_9POAL; Uncharacterized protein
STRING	Pavir.J05063.1.p	1e-135	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2358	37	91