PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00446.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 191aa MW: 21374.8 Da PI: 9.8525

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00446.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.3	2e-09	48	89	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 W+t E+ +++++ + +G +Wk Ia ++ k+Rt+ + s+ qky Zmw_sc00446.1.g00040.1.sm.mk 48 WSTGEHRQFLRGLRVYGRSDWKNIAMHFVKTRTA--VSSHAQKY 89 *****************************99998..99999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.504	40	94	IPR017930	Myb domain
SuperFamily	SSF46689	1.25E-10	41	94	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-6	44	83	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.0E-11	44	93	IPR006447	Myb domain, plants
SMART	SM00717	9.7E-7	44	92	IPR001005	SANT/Myb domain
Pfam	PF00249	6.1E-6	48	89	IPR001005	SANT/Myb domain
CDD	cd00167	2.40E-6	48	89	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MQREVLDDDP AMGNMDVLLG PVNVVDTTRA RRQPPRYPRA LRNKGRFWST GEHRQFLRGL 60 RVYGRSDWKN IAMHFVKTRT AVSSHAQKYY RRQESGVARQ QYSINDVSLY DAEPWAAPTN 120 NSSGSWETLS LAGGDYNNSN GYIAFGQQAP AQPALTMNNP APAMNNSAPT MNNTTPAMNY 180 TALAMNYTDP P

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A3L6S5I4	5e-38	A0A3L6S5I4_PANMI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP842	30	133