PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00462.1.g00200.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 422aa MW: 44826.7 Da PI: 8.0396

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00462.1.g00200.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	108.8	4.2e-34	38	137	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 +C aCk+lrrkC ++C++ap+f +eq kf+++h +FGas++ kll+++p+++r+da+ s++yeA+ar+ dPvyG+ + i Zmw_sc00462.1.g00200.1.am.mk 38 PCGACKFLRRKCINGCIFAPHFDSEQgVTKFEMLHTVFGASKIAKLLDEIPQHKRPDAVFSICYEAQARICDPVYGCSNQI 118 7*********************9977************************************************* PP DUF260 81 lklqqqleqlkaelallke 99 l+lq+q e ++ ++ l++ Zmw_sc00462.1.g00200.1.am.mk 119 LALQEQAELTNMQIRLAEM 137 ******99999988776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.658	37	139	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-33	38	135	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MAHGVGTPSL SGGIGGGGGG GDGGSGNEGG EGGGRSGPCG ACKFLRRKCI NGCIFAPHFD 60 SEQGVTKFEM LHTVFGASKI AKLLDEIPQH KRPDAVFSIC YEAQARICDP VYGCSNQILA 120 LQEQAELTNM QIRLAEMELA RQSTFVGEPH VSIASTYPVY NLPASSNILA TINPSSLSDL 180 QTQSQLASQQ QVQHQQLHQQ QFVQESGSVV GNSNDLLALE SELMYGVTGV APPLQDIYHL 240 LPAPLTCCRS QPALTSHANG GVWDQMEEGP ARLMYCSISF RNSSSTSDSR QQEGGGPEPR 300 LVSSTLRPCL THLPVRHPSC PSAAGPAPFW IYLSAALKLA VAGAVAARCR PASHQPLQPA 360 TGPLALPNFA AAPASLSTTT ARCLPCSPAT ACRRLRRPAA AHHRPFRTYL FSGETRRQTR 420 PH

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MAHGVGTPSL SGGIGGGGGG GDGGSGNEGG EGGGRSGPCG ACKFLRRKCI NGCIFAPHFD  60
SEQGVTKFEM LHTVFGASKI AKLLDEIPQH KRPDAVFSIC YEAQARICDP VYGCSNQILA  120
LQEQAELTNM QIRLAEMELA RQSTFVGEPH VSIASTYPVY NLPASSNILA TINPSSLSDL  180
QTQSQLASQQ QVQHQQLHQQ QFVQESGSVV GNSNDLLALE SELMYGVTGV APPLQDIYHL  240
LPAPLTCCRS QPALTSHANG GVWDQMEEGP ARLMYCSISF RNSSSTSDSR QQEGGGPEPR  300
LVSSTLRPCL THLPVRHPSC PSAAGPAPFW IYLSAALKLA VAGAVAARCR PASHQPLQPA  360
TGPLALPNFA AAPASLSTTT ARCLPCSPAT ACRRLRRPAA AHHRPFRTYL FSGETRRQTR  420
PH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-31	34	143	7	115	LOB family transfactor Ramosa2.1
5ly0_B	2e-31	34	143	7	115	LOB family transfactor Ramosa2.1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP70272	2	2