PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00466.1.g00270.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 190aa MW: 21358.9 Da PI: 8.894

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00466.1.g00270.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	40.3	5.1e-13	100	124	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tG+Ck+G++CkF+H++ Zmw_sc00466.1.g00270.1.sm.mkhc 100 QPECQYYLKTGICKFGATCKFHHPR 124 799********************96 PP
2	zf-CCCH	17	1e-05	146	164	3	21
S---SGGGGTS--TTTTT- CS zf-CCCH 3 telCrffartGtCkyGdrC 21 +++C ++ rtG+Ck+G +C Zmw_sc00466.1.g00270.1.sm.mkhc 146 EKECAYYIRTGHCKFGMTC 164 679*************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.943	97	125	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.8E-6	97	124	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.1E-10	100	124	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.1E-7	100	126	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.4E-5	103	125	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	8.258	143	164	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	27	143	167	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MKVSATLLVL LLLPSCVPLW NSEVFARARC VAVGFGWDWD HVVAVCGKLC FASGDVWVAN 60 RLRSHGRAEL SNAELSAVSV AHTAVAVARM KGEYPQRVGQ PECQYYLKTG ICKFGATCKF 120 HHPREKAAMA NRVQWNSLGY PLRPNEKECA YYIRTGHCKF GMTCSDWFVI LRRPTADVWR 180 CPILYSLTTE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q2R4J4	2e-46	C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBL	A0A0E0F5M8	6e-45	A0A0E0F5M8_9ORYZ; Uncharacterized protein
STRING	OMERI11G10690.2	2e-45	(Oryza meridionalis)
STRING	ORGLA11G0112800.1	2e-45	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP34972	2	4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]