PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00467.1.g00540.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 137aa    MW: 14905.8 Da    PI: 10.7602
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00467.1.g00540.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.71.2e-164983135
                          GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                                  C +C + kT +WR gp g+ktLCnaCG++y++ +l
  Zmw_sc00467.1.g00540.1.am.mk 49 CPHCASEKTQQWRTGPLGPKTLCNACGVRYKSGRL 83
                                  9******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.3E-144393IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.1064779IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-1447107No hitNo description
Gene3DG3DSA:3.30.50.104.6E-124781IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.58E-104895No hitNo description
PfamPF003201.1E-144983IPR000679Zinc finger, GATA-type
PROSITE patternPS0034404974IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MPPAPSPSSI NHQAWQRSKN KQNLPAAPAA GGGGDDPNSR SENGGVRRCP HCASEKTQQW  60
RTGPLGPKTL CNACGVRYKS GRLVPEYRPA ASPTFVLTQH SNSHRKVMEL RRQKELIHLR  120
GTSSSASSSP FRDYGLC
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574323.16e-49GATA transcription factor 2
SwissprotO497415e-45GATA2_ARATH; GATA transcription factor 2
TrEMBLA0A287Q1I01e-48A0A287Q1I0_HORVV; Uncharacterized protein
TrEMBLA0A3B6KUH93e-48A0A3B6KUH9_WHEAT; GATA transcription factor
TrEMBLA0A446TQN82e-48A0A446TQN8_TRITD; Uncharacterized protein
TrEMBLA0A446TQQ53e-48A0A446TQQ5_TRITD; GATA transcription factor
STRINGBRADI3G33200.12e-48(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46212955
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]