PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00472.1.g00080.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 798aa    MW: 84430.7 Da    PI: 7.182
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00472.1.g00080.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.6e-134044431155
                                   HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   rRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  Zmw_sc00472.1.g00080.1.am.mk 404 RRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 443
                                   8******************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.2E-17386450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.77E-17386454IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.07E-15391447No hitNo description
PROSITE profilePS5088814.869393442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-14394448IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-10404443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:2.60.40.7602.1E-6637674IPR007117Expansin, cellulose-binding-like domain
SuperFamilySSF495907.59E-5637673IPR007117Expansin, cellulose-binding-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 798 aa     Download sequence    Send to blast
MPLYSCLKAT AGPLRPSSSF SSSTAYSSSH TEKEIQTPAG EHQNLENPSA WIAKPSVGAN  60
GIEASCEPIP ERLGAMNQFV PDWSNDMGDN SRPLGEDDDL IELLWCNGHV VMQSQTNRKL  120
PPRPEKPGLG PPVAAAAAAA TAAPVAQEDE AGLWFPFALA DSLDKDIFSD FFCDAPMVAP  180
VAAPATAVEA GKSPCRDVPV PPPEDGMRGA VSEAPPCDLM PPPKSTPHVS CSRQQTISLG  240
DGDHADDLSE LVRAGAAGSG RKAGTEAGAA SSSMLSAIGS SICGSNQVLV PRAVSVPDTA  300
YALPSAVGSA NANASGRCHE TTVASSSGRS NGCFGTTTTE PTSTSNRSSK RKRLDTEDSE  360
SPSEDAEWES AAAARKLPPK MATARRSRAA EVHNLSERVR VFPRRRDRIN EKMRALQELI  420
PHCNKTDKAS MLDEAIEYLK SLQLQVQMMW MGSGIAAPPV MFPGVHQYLP RMGVGMGAAA  480
AMPRMPFMAP QPVVPSPPVN PVPLSPGQMP AVGITEPYAH YLGVNHLQPT PTQHFTQGVG  540
YYPLGTKGVQ QNPAIHAPGG AAAGIKVLFV VGKMTTLERS RGQGVTVIFR LRADDALVLL  600
CADLTDPWPP PGCTAFTNKL VPRLTHTRVF SSSATLGFPL KCPFSIRLTS QSGGHLIQDD  660
VVLADWKANT LFFSFPQCPS SSVSSRIGSD CGFAFSATAA AVAAATARVS AAAATVGFSG  720
NDGAAFEYRH CCCKRAVVDV PLLETRAVIA VPHEPPSPSC SQTVIRRQQY VRNYTMNMES  780
QRGIVGNKKY LEGKLQGD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698353.10.0transcription factor PIF1 isoform X2
TrEMBLA0A368SH290.0A0A368SH29_SETIT; Uncharacterized protein
TrEMBLA0A368SH310.0A0A368SH31_SETIT; Uncharacterized protein
STRINGSi035110m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677