PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00475.1.g00190.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 210aa MW: 22357.8 Da PI: 6.7738

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00475.1.g00190.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.3	5.6e-05	104	126	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk F ++ + H++ H Zmw_sc00475.1.g00190.1.am.mk 104 FICSYCGKKFCSPQAFGGHQNAH 126 89**************9999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.81E-5	103	132	No hit	No description
PROSITE profile	PS50157	11.011	104	131	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	106	126	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MDDELLNDQD SGLGCCLPVH GGGGIDTWGR AMLRGSISAS NEPKRGYSCS SSSHVAVHTR 60 TSFSLYPTGR PASMDPDGAG RDLDLNLSLQ PSYPAPEPEP PGYFICSYCG KKFCSPQAFG 120 GHQNAHKLER SLTKRARELA AARVRQDGQE RDGAADEQAS SSRRGKEPVA IAVSSTGSAA 180 SLPSHQIRAP PEATSRRDSI AEDMDLSLKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020396330.1	3e-36	zinc finger protein 4
TrEMBL	A0A1D6I4T6	7e-35	A0A1D6I4T6_MAIZE; Uncharacterized protein
STRING	GRMZM2G108818_P01	2e-35	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP183	36	274