PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00482.1.g00380.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 207aa    MW: 22645.2 Da    PI: 11.6354
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00482.1.g00380.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM96.44.3e-30201631128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk. 79 
                                   lppGfrF+Ptdeelv +yL++k+ g +l++++vi+ v d+y ++Pwd+p    a++ e yfF+ r  +     r++     
  Zmw_sc00482.1.g00380.1.sm.mk  20 LPPGFRFKPTDEELVLQYLRRKALGVPLPAADVITVVrDLYGLDPWDIP---GASDGEKYFFAIRPAAGVDRPRAKT--Gg 95 
                                   79*********************************999***********...3467899*****9998765444444..23 PP

                           NAM  80 ....sgyWkatgkdkevlsk....kgelvglkktLvfy...........kgrapkgektdWvmheyrl 128
                                       sg+Wk  gk+++v+      ++ l+g k+ L+f            +++a  g  t Wvmheyrl
  Zmw_sc00482.1.g00380.1.sm.mk  96 ampaSGRWKPEGKERPVVLPrpcgGSLLIGAKRALAFAprrrgkkstnkQASAAAGLTTGWVMHEYRL 163
                                   34459*************9989877778**********9998887776556788888*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.23E-3416168IPR003441NAC domain
PROSITE profilePS5100535.13420180IPR003441NAC domain
PfamPF023652.7E-1921163IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MERAPALVRH AGGVATLRQL PPGFRFKPTD EELVLQYLRR KALGVPLPAA DVITVVRDLY  60
GLDPWDIPGA SDGEKYFFAI RPAAGVDRPR AKTGGAMPAS GRWKPEGKER PVVLPRPCGG  120
SLLIGAKRAL AFAPRRRGKK STNKQASAAA GLTTGWVMHE YRLATALLHK NTLLFQWNHH  180
TTVTSESSVG GRWHKLLRSS RRSVSIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-201916314140Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147463.11e-70uncharacterized LOC100281072
TrEMBLB6SRZ12e-69B6SRZ1_MAIZE; NAC domain-containing protein 68
STRINGSi014408m4e-69(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118183140