PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00487.1.g00310.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 645aa MW: 68189.3 Da PI: 7.6136

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00487.1.g00310.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.3	7.8e-15	402	476	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC..........................TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkas.......................kapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ +++ +Ka++Le+A+eY+k Lq Zmw_sc00487.1.g00310.1.am.mk 402 VHNLSERRRRDRINEKMRALQELIPNCNkvnspidrrgrshdvrtfvltqlRNSILQIDKASMLEEAIEYLKTLQ 476 5***********************888****************766666669**************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	9.32E-14	395	480	No hit	No description
SuperFamily	SSF47459	6.67E-16	396	486	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.037	398	475	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-12	402	476	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.3E-17	402	484	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-15	404	481	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 645 aa Download sequence Send to blast
MGLPHLSAAS LGWVGGASLL TTRLARCLSS SPSSISTHAT PLCQLLLPLQ CYPGAPRHCR 60 SPTCRRASHP RAGAPSPRSN RPGDELAELL WDSNCPALRT TPHFPAAAPF QPFTCGAAGS 120 SRANELLNKR HAVGAMDDDV AGLGGIPAVH HDHDHDAVPW LHCPVIDDGD SDTAPLPPEY 180 CAGLLSPGYT GLHALPDPTP TVSDIARSSS TGGAVVVPAT RAVTPEAATA QPQPSAAGEG 240 VMNFTFFSRP LQRLQPSAAA AAPPPSNLLE FTTAAQTAAS RLRNTPLFSE QRMAWLQPPK 300 GPPRATAGAP PATDRHHHAE AAATVTQNRM QQPPDARPPD ATAGVTTSSV CSGNGDRSHD 360 KRSSHHPTAE CSVSPDEDMD DEPGAVRRPT ERGTKRSRTA EVHNLSERRR RDRINEKMRA 420 LQELIPNCNK VNSPIDRRGR SHDVRTFVLT QLRNSILQID KASMLEEAIE YLKTLQLQVQ 480 LMSMGTGLCV PAAPMLMQMQ MPLVAPPFPH LGMGLGFGAV GFDILPRFAA AQFPCPVMPP 540 GAVFGMPGQV VPSPLAPFAH VNGAATVEHR EAAAAAAPAP PGGGAAAGDR QPSVPVPLQV 600 LYARPLIKIA IFFSGRPEAA APEADVTTDD AAYPRAVADR MHPWS

Sequence ? help Back to Top

Protein Sequence Length: 645 aa Download sequence Send to blast

MGLPHLSAAS LGWVGGASLL TTRLARCLSS SPSSISTHAT PLCQLLLPLQ CYPGAPRHCR  60
SPTCRRASHP RAGAPSPRSN RPGDELAELL WDSNCPALRT TPHFPAAAPF QPFTCGAAGS  120
SRANELLNKR HAVGAMDDDV AGLGGIPAVH HDHDHDAVPW LHCPVIDDGD SDTAPLPPEY  180
CAGLLSPGYT GLHALPDPTP TVSDIARSSS TGGAVVVPAT RAVTPEAATA QPQPSAAGEG  240
VMNFTFFSRP LQRLQPSAAA AAPPPSNLLE FTTAAQTAAS RLRNTPLFSE QRMAWLQPPK  300
GPPRATAGAP PATDRHHHAE AAATVTQNRM QQPPDARPPD ATAGVTTSSV CSGNGDRSHD  360
KRSSHHPTAE CSVSPDEDMD DEPGAVRRPT ERGTKRSRTA EVHNLSERRR RDRINEKMRA  420
LQELIPNCNK VNSPIDRRGR SHDVRTFVLT QLRNSILQID KASMLEEAIE YLKTLQLQVQ  480
LMSMGTGLCV PAAPMLMQMQ MPLVAPPFPH LGMGLGFGAV GFDILPRFAA AQFPCPVMPP  540
GAVFGMPGQV VPSPLAPFAH VNGAATVEHR EAAAAAAPAP PGGGAAAGDR QPSVPVPLQV  600
LYARPLIKIA IFFSGRPEAA APEADVTTDD AAYPRAVADR MHPWS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	406	411	ERRRRD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008662938.1	1e-133	transcription factor APG isoform X2
TrEMBL	A0A0A9P987	1e-154	A0A0A9P987_ARUDO; Uncharacterized protein
STRING	GRMZM2G062541_P01	1e-132	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3527	37	75