PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00495.1.g00210.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 226aa    MW: 25488.2 Da    PI: 7.4746
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00495.1.g00210.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.53.6e-09146194247
                                   SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                                   + W+   d+l+ +a + + ++   +W+ +ar +g +++ ++++ ++qk+
  Zmw_sc00495.1.g00210.1.am.mk 146 QEWSRSQDKLFERALAVYDTDtpdRWHNVARFIGGTKSVEEVRRHYQKL 194
                                   78*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.423140195IPR017877Myb-like domain
SMARTSM007177.1E-10144197IPR001005SANT/Myb domain
SuperFamilySSF466894.34E-11146202IPR009057Homeodomain-like
PfamPF002492.7E-7146194IPR001005SANT/Myb domain
CDDcd001675.69E-7147194No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MSINHLEEPN SVPDVPGAFQ LSHSRAGRLS PLSLEDTDLS RANFSADQSP SWPWHRLAST  60
DGQEAASKPF QGIPICHISR PEKEPSPWRL YKSNPNEPDL AFKAPFPTNH PSHRHAHTSE  120
EDHSTLPVPH CPLIRNRTMA SNTKSQEWSR SQDKLFERAL AVYDTDTPDR WHNVARFIGG  180
TKSVEEVRRH YQKLEEDVAR IESGGAPFHW YAAAAPPPAR TVQRGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-18139208170RADIALIS
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4706723