PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00496.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 412aa MW: 43675.4 Da PI: 8.4893

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00496.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.1	6.4e-13	341	386	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ k + a++L +Av+YIk+Lq Zmw_sc00496.1.g00040.1.am.mk 341 SIAERVRRTRISERIRKLQELVPNM----EKQTNTADMLDLAVDYIKDLQ 386 689*******************7....467***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.199	335	385	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.14E-15	338	395	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.96E-13	339	390	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.6E-15	340	396	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.8E-13	341	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.5E-10	341	386	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MYGSAVSKDL NQLPDVQPQP AAAPQMSAPG LLRYRSAPSN LLGELCAAGF HAAGGGAAGH 60 HHRTDHAADA ALTRFHAGNH DDVGDCKPPR PAAAAHFLHD ASSMASQQQH QLVYESQQQQ 120 QQHMAAAQRD GFYSYRTLGS RGTEHDANVA AVGSGNSLLR QSSSPAGFLN HLNMDNGYGN 180 MFRVGGMAAG EFRNGGDARL KGQLSYSSRQ GSVMSQISEM GSEELGGGSP EAGSNGGTAA 240 RSYSGIIPAA GGYPMDGGWD DACAAPDHNH LSGAKRSRDP AHAPPVSNGH HLAPQLSLPG 300 GVGGNGKTSA DMAAIEKFLH FQDAVPCKIR AKRGCATHPR SIAERVRRTR ISERIRKLQE 360 LVPNMEKQTN TADMLDLAVD YIKDLQKQVK GLNDDRANCT CSAGKRQNQF TR

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MYGSAVSKDL NQLPDVQPQP AAAPQMSAPG LLRYRSAPSN LLGELCAAGF HAAGGGAAGH  60
HHRTDHAADA ALTRFHAGNH DDVGDCKPPR PAAAAHFLHD ASSMASQQQH QLVYESQQQQ  120
QQHMAAAQRD GFYSYRTLGS RGTEHDANVA AVGSGNSLLR QSSSPAGFLN HLNMDNGYGN  180
MFRVGGMAAG EFRNGGDARL KGQLSYSSRQ GSVMSQISEM GSEELGGGSP EAGSNGGTAA  240
RSYSGIIPAA GGYPMDGGWD DACAAPDHNH LSGAKRSRDP AHAPPVSNGH HLAPQLSLPG  300
GVGGNGKTSA DMAAIEKFLH FQDAVPCKIR AKRGCATHPR SIAERVRRTR ISERIRKLQE  360
LVPNMEKQTN TADMLDLAVD YIKDLQKQVK GLNDDRANCT CSAGKRQNQF TR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001151233.1	1e-152	uncharacterized protein LOC100284866
TrEMBL	A0A0A9VBR8	1e-172	A0A0A9VBR8_ARUDO; Uncharacterized protein
STRING	GRMZM2G085467_P02	1e-151	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1884	38	103