PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00505.1.g00130.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 801aa MW: 86936.1 Da PI: 10.778

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00505.1.g00130.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.4	5.2e-08	720	760	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ +L++l+P +K++ a++L +A++Y+k L Zmw_sc00505.1.g00130.1.am.mk 720 ARLRRERISERIRTLQRLVPGG-----TKMDTASMLDEAIHYVKFL 760 599***************87.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.675	711	760	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-13	712	776	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.72E-14	715	772	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	717	766	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.6E-5	721	760	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.63E-5	733	765	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 801 aa Download sequence Send to blast
MASEVVRVPA SGSARAEGVV GGNMCPFVFW AFSSQQREIV AWNGGRSSFQ PARPPAPRAI 60 PVYGKPQRAV ALLRCSLLAA RDLSGHSAAA LARLPVVQIS LHARMIMARG RPRWQSPGSL 120 QVAGCGVMAC DDRRGHDVVE ASRVHAKAAS ARLVISDRSE IGIKINDGVP GGIPPPGKRR 180 SSPSSAHGWT HLWSRAWPLP QVYSIVPYTT HETGDEPCGE LAVALARRVV HGAPHGVCLP 240 LPPCSDASRL SIVVHPRRAR MRTAVDHMRR SVVRQRDALS LRVRFGLPGR RNVFGRSGFY 300 RGYTYGRTVG SSTVTGLAKG RVARGQANWP SDRNKMAPCD YSARKQNYLS TCTSTTYDSS 360 ACLVTFRASQ PAGQARRKSK RTRQTRRTDD EADEVGTFER APRLTLARDG SNPKKAACLP 420 VAHHVPLTTK RASVDGCTTH ELGRQLLLRG PDGGCGFSLL IIPAMIAAHV SRERHGRPRC 480 RVRRRWRVVT HAEHRRQANE RNMPVLHLVT GLWAAARAVG SRAAGTLEAG PEPECHQSDS 540 AEQSDRGLQH ACEKRSPTTA STCQAVAGWR NPEAQLELMK TMLELEQLTA LDQSLMAPMS 600 PPISPMQTPA AAQSHCFSPP PYMSPTIIST GSPDGQYAAP AAYTAISGSE QHQQDHYVLS 660 PGADAPTGAM LGSSTSSADA MREVMFHIAA LQPVEIDPEA VRPPKRRNVR ISKDPQSVAA 720 RLRRERISER IRTLQRLVPG GTKMDTASML DEAIHYVKFL KSQVQSLERA AAATHHAAAL 780 GAAYPAFHAS WQYALPHGGE L

Sequence ? help Back to Top

Protein Sequence Length: 801 aa Download sequence Send to blast

MASEVVRVPA SGSARAEGVV GGNMCPFVFW AFSSQQREIV AWNGGRSSFQ PARPPAPRAI  60
PVYGKPQRAV ALLRCSLLAA RDLSGHSAAA LARLPVVQIS LHARMIMARG RPRWQSPGSL  120
QVAGCGVMAC DDRRGHDVVE ASRVHAKAAS ARLVISDRSE IGIKINDGVP GGIPPPGKRR  180
SSPSSAHGWT HLWSRAWPLP QVYSIVPYTT HETGDEPCGE LAVALARRVV HGAPHGVCLP  240
LPPCSDASRL SIVVHPRRAR MRTAVDHMRR SVVRQRDALS LRVRFGLPGR RNVFGRSGFY  300
RGYTYGRTVG SSTVTGLAKG RVARGQANWP SDRNKMAPCD YSARKQNYLS TCTSTTYDSS  360
ACLVTFRASQ PAGQARRKSK RTRQTRRTDD EADEVGTFER APRLTLARDG SNPKKAACLP  420
VAHHVPLTTK RASVDGCTTH ELGRQLLLRG PDGGCGFSLL IIPAMIAAHV SRERHGRPRC  480
RVRRRWRVVT HAEHRRQANE RNMPVLHLVT GLWAAARAVG SRAAGTLEAG PEPECHQSDS  540
AEQSDRGLQH ACEKRSPTTA STCQAVAGWR NPEAQLELMK TMLELEQLTA LDQSLMAPMS  600
PPISPMQTPA AAQSHCFSPP PYMSPTIIST GSPDGQYAAP AAYTAISGSE QHQQDHYVLS  660
PGADAPTGAM LGSSTSSADA MREVMFHIAA LQPVEIDPEA VRPPKRRNVR ISKDPQSVAA  720
RLRRERISER IRTLQRLVPG GTKMDTASML DEAIHYVKFL KSQVQSLERA AAATHHAAAL  780
GAAYPAFHAS WQYALPHGGE L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	476	486	RPRCRVRRRWR
2	701	706	RPPKRR
3	720	725	RLRRER

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3103	36	82