PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00505.1.g00140.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 105aa    MW: 11985.6 Da    PI: 6.5044
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00505.1.g00140.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind79.84.2e-252483260
                                  HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
                  HSF_DNA-bind  2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                                  Fl+k+y++++d+++++++sw  ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+Y
  Zmw_sc00505.1.g00140.1.am.mk 24 FLTKTYQLVDDPATDHIVSWGdDRVSTFVVWRPPEFARDILPNYFKHNNFSSFVRQLNTY 83
                                  9********************6667**********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.9E-261583IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.2E-2320104IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.18E-212383IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.5E-202483IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-152447IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-156375IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-157688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MERVERCGNW ECDAGAQKAV PAPFLTKTYQ LVDDPATDHI VSWGDDRVST FVVWRPPEFA  60
RDILPNYFKH NNFSSFVRQL NTYVSVAFGL LLPSYVLLRG VFISS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-1514832087Heat shock factor protein 1
5d5v_B7e-1514832087Heat shock factor protein 1
5d5v_D7e-1514832087Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957003.12e-43heat stress transcription factor B-4c
SwissprotQ67U941e-40HFB4C_ORYSJ; Heat stress transcription factor B-4c
TrEMBLA0A0E0B3T94e-43A0A0E0B3T9_9ORYZ; Uncharacterized protein
TrEMBLA0A453KZB56e-44A0A453KZB5_AEGTS; Uncharacterized protein
STRINGOGLUM09G13090.17e-44(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394