PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00508.1.g00330.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 85aa MW: 9748.96 Da PI: 7.3652

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00508.1.g00330.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.9	8.4e-09	11	52	14	54
HHHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPkas.kapskKlsKaeiLekAveYIksL 54 d+iN+ +++L++llP++s + ++ + s + L++++ YIk+L Zmw_sc00508.1.g00330.1.sm.mk 11 DEINELISKLQDLLPESSrRRNASRSSASKLLKETCSYIKNL 52 68************6647777889************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.794	1	52	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.01E-9	11	71	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.8E-6	11	52	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.8E-10	11	69	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 85 aa Download sequence Send to blast
MSGRRGRISD DEINELISKL QDLLPESSRR RNASRSSASK LLKETCSYIK NLHREVDDLS 60 DRLSELMSTM DNDSPQAEII RSLLR

Functional Description ? help Back to Top
Source	Description
UniProt	Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
UniProt	Atypical and probable non DNA-binding bHLH transcription that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015613962.1	2e-41	transcription factor ILI3-like
Swissprot	A2XD15	1e-34	ILI3_ORYSI; Transcription factor ILI3
Swissprot	Q10R47	1e-34	ILI3_ORYSJ; Transcription factor ILI3
TrEMBL	A0A1E5VT24	1e-46	A0A1E5VT24_9POAL; Transcription factor ILI3
STRING	OGLUM10G09100.1	1e-40	(Oryza glumipatula)
STRING	OMERI10G06270.1	1e-40	(Oryza meridionalis)
STRING	ORUFI10G09690.1	1e-40	(Oryza rufipogon)
STRING	OS10T0403800-00	1e-40	(Oryza sativa)
STRING	ORGLA10G0079400.1	1e-40	(Oryza glaberrima)
STRING	OBART10G09290.1	1e-40	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP928	38	145