PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00511.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 399aa MW: 43016.7 Da PI: 10.1383

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00511.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.5	1.5e-13	84	128	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ Ia+ + ++Rt+ q+ s+ qky Zmw_sc00511.1.g00060.1.sm.mkhc 84 PWTEEEHRTFLVGLEKLGKGDWRGIAKIFVTTRTPTQVASHAQKY 128 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.621	77	133	IPR017930	Myb domain
SuperFamily	SSF46689	7.18E-18	78	133	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.8E-18	80	132	IPR006447	Myb domain, plants
SMART	SM00717	2.2E-10	81	131	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-11	84	128	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-10	84	127	IPR009057	Homeodomain-like
CDD	cd00167	1.98E-9	84	129	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MRLFGVTIAP APEVDPSSQD PSPNPPLAAR EDVMRKCKSM GNLAAVAAAS VDGSGAGDGY 60 HSDDGLMQSS GKRRRAQERK KAVPWTEEEH RTFLVGLEKL GKGDWRGIAK IFVTTRTPTQ 120 VASHAQKYFL RQTNPNKKKR RSSLFDMMPG DALPVPNCHI LPSSGTKVHD VVAMSKQLQN 180 SKLEVVSSSN TGNVESRVER NLPPIPPFKP TSKDSSFSKL NLMERWRTPF PFRPIPRGLE 240 GTSSIPATAN IATMATSSIP ATADIATMTS ETNMAECATA FLGPKIDPSS PSLPGAGYPE 300 EKKDLELTFG PPSQQNMTNI SSKNAEDRRQ GWASQHSGRL AVRSCRAAPR EIGGEIGASQ 360 AHLPCGTPAQ PFGTYAVLSQ ARQPRDTAPT PIPVPHHVN

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MRLFGVTIAP APEVDPSSQD PSPNPPLAAR EDVMRKCKSM GNLAAVAAAS VDGSGAGDGY  60
HSDDGLMQSS GKRRRAQERK KAVPWTEEEH RTFLVGLEKL GKGDWRGIAK IFVTTRTPTQ  120
VASHAQKYFL RQTNPNKKKR RSSLFDMMPG DALPVPNCHI LPSSGTKVHD VVAMSKQLQN  180
SKLEVVSSSN TGNVESRVER NLPPIPPFKP TSKDSSFSKL NLMERWRTPF PFRPIPRGLE  240
GTSSIPATAN IATMATSSIP ATADIATMTS ETNMAECATA FLGPKIDPSS PSLPGAGYPE  300
EKKDLELTFG PPSQQNMTNI SSKNAEDRRQ GWASQHSGRL AVRSCRAAPR EIGGEIGASQ  360
AHLPCGTPAQ PFGTYAVLSQ ARQPRDTAPT PIPVPHHVN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	140	KKKRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001339748.1	1e-138	uncharacterized protein LOC110467540
TrEMBL	A0A1E5VMR7	1e-141	A0A1E5VMR7_9POAL; Transcription factor DIVARICATA
STRING	GRMZM2G108892_P01	1e-137	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5858	36	52