PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00521.1.g00070.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Protein Properties

Length: 177aa MW: 20307.6 Da PI: 9.6688

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00521.1.g00070.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	46.7	5.6e-15	38	114	13	90
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 +++ l ++a++ g++ +++ ++++ + + W+ ++ + +sgr +l++GW +Fv++ngL++gD+++F+l+++ +++ Zmw_sc00521.1.g00070.1.sm.mk 38 NHLKELGSRYARTVGLPARRG-QVVVLQYMRKIWKTEM-MIHHSGRQFLGGGWLRFVHDNGLRVGDICLFELKNErKNG 114 555667788999999997776.88888999******.677888889*********************99765665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.71E-14	22	110	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.89E-14	23	110	No hit	No description
SMART	SM01019	6.6E-5	31	128	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	4.6E-14	33	111	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.8E-12	38	113	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.193	59	124	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MKSCKCCERD LNHLDAKNQN MTCFLRLMTG NIKCNTENHL KELGSRYART VGLPARRGQV 60 VVLQYMRKIW KTEMMIHHSG RQFLGGGWLR FVHDNGLRVG DICLFELKNE RKNGPPRPSP 120 LSELRNHSHQ DGPLPCVRYA DVIMTNIVAR LAVSDALDKH WVLPTSVSLE KCRPMDQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022685567.1	4e-19	B3 domain-containing protein Os03g0619600-like
Refseq	XP_025797617.1	2e-18	B3 domain-containing protein Os03g0619800-like isoform X1
Refseq	XP_025797619.1	2e-18	B3 domain-containing protein Os03g0619800-like isoform X2
Refseq	XP_025797620.1	2e-18	B3 domain-containing protein Os03g0619800-like isoform X3

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP585	31	172