PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00524.1.g00160.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 716aa MW: 77508 Da PI: 10.0102

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00524.1.g00160.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.5	2e-07	322	362	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ +L++l+P +K++ a++L +A+ Y+k L Zmw_sc00524.1.g00160.1.am.mk 322 ARLRRERISERIRTLQRLVPGG-----TKMDTASMLDEAILYVKFL 362 699***************87.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.434	313	362	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-12	314	382	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-13	317	374	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-11	319	368	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.5E-5	323	362	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.33E-5	335	367	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 716 aa Download sequence Send to blast
MILLPGSEDT HFGRELWPVA GGTFRASRGG RRKKQRRGTG DEADDVGNFE RANDGTVDDG 60 SDPRKGCRPS HATHHQAASE QASTTGEIDP SLGQARPAAS SLLIITAMIV EKRNPVPHAC 120 SRWNRTETSC VQVDLRPVAQ GHRLQGGKGT EHACTPPYQG HVGCRAAETR CGPEAQFELM 180 KTMLQLEQFT ALDQTLMAPM SPPISPVQTP STQSHCFSPL PYMSSAMINS SSPDGQYAAA 240 PATYPAAGPE DHLDYVLSPG ADAAGALLGS SSSPSSSAAA DAMREAIFHI AALQPVEIDP 300 EAVRPPKRRN VRISKDPQSV AARLRRERIS ERIRTLQRLV PGGTKMDTAS MLDEAILYVK 360 FLKSQVQYLE RAAAATHRAA ALGAAYPALH APWQYVVPHG DIPCMRYDLS SMAKMAVSPV 420 SVAGRCRICL VISLPSLAGI FSTCFCSTIR TQDRRKRAAG LPDPGKCRPP ALNTREKFGA 480 WGTLCANQRQ LPVSADRTRR AEPRRRRQLE PLPDARHVAA GHGRGRRRHA PRGRTRGPRA 540 GERSVPEQDS REILPWHAQA KVHASVLVEG TEAKQEGTRP VQFSSGDTVG TRTGKNSNVS 600 AARRHLAGRP DGRRLIFXXX GPLWLRSPRS FDAPFDLFAD SVNALFCCAN DVSPHSLERD 660 DMCGVLKSSK HLWLSDELAA RGVIYEPRRI SVAAPTKGRA TWAGSALASQ GGYSAG

Sequence ? help Back to Top

Protein Sequence Length: 716 aa Download sequence Send to blast

MILLPGSEDT HFGRELWPVA GGTFRASRGG RRKKQRRGTG DEADDVGNFE RANDGTVDDG  60
SDPRKGCRPS HATHHQAASE QASTTGEIDP SLGQARPAAS SLLIITAMIV EKRNPVPHAC  120
SRWNRTETSC VQVDLRPVAQ GHRLQGGKGT EHACTPPYQG HVGCRAAETR CGPEAQFELM  180
KTMLQLEQFT ALDQTLMAPM SPPISPVQTP STQSHCFSPL PYMSSAMINS SSPDGQYAAA  240
PATYPAAGPE DHLDYVLSPG ADAAGALLGS SSSPSSSAAA DAMREAIFHI AALQPVEIDP  300
EAVRPPKRRN VRISKDPQSV AARLRRERIS ERIRTLQRLV PGGTKMDTAS MLDEAILYVK  360
FLKSQVQYLE RAAAATHRAA ALGAAYPALH APWQYVVPHG DIPCMRYDLS SMAKMAVSPV  420
SVAGRCRICL VISLPSLAGI FSTCFCSTIR TQDRRKRAAG LPDPGKCRPP ALNTREKFGA  480
WGTLCANQRQ LPVSADRTRR AEPRRRRQLE PLPDARHVAA GHGRGRRRHA PRGRTRGPRA  540
GERSVPEQDS REILPWHAQA KVHASVLVEG TEAKQEGTRP VQFSSGDTVG TRTGKNSNVS  600
AARRHLAGRP DGRRLIFXXX GPLWLRSPRS FDAPFDLFAD SVNALFCCAN DVSPHSLERD  660
DMCGVLKSSK HLWLSDELAA RGVIYEPRRI SVAAPTKGRA TWAGSALASQ GGYSAG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	303	308	RPPKRR
2	322	327	RLRRER

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP64802	2	2