PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00526.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 96aa    MW: 10722.8 Da    PI: 4.5611
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00526.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.27.8e-08451347
                                  SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                                  +WT  E + +  a + + ++   +W+ +art+g g+t  ++  ++ k+
  Zmw_sc00526.1.g00010.1.am.mk  4 SWTVKENKVFETALATFDKDtpdRWENVARTVGGGKTVDDVERHYAKL 51
                                  7********************************************886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.6E-4154IPR001005SANT/Myb domain
PROSITE profilePS512939.57156IPR017884SANT domain
SuperFamilySSF466891.54E-10356IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MSSSWTVKEN KVFETALATF DKDTPDRWEN VARTVGGGKT VDDVERHYAK LIQDLREMEA  60
EGLLGSLFAD GGGSSKDDEE QRWLRSLSAS PHSYLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-195811186RADIALIS
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019261955.12e-28PREDICTED: protein RADIALIS-like 3
TrEMBLA0A0A9H5008e-28A0A0A9H500_ARUDO; Uncharacterized protein
TrEMBLA0A0A9VQK38e-28A0A0A9VQK3_ARUDO; Uncharacterized protein
STRINGXP_009779120.12e-27(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230