PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00528.1.g00250.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 692aa    MW: 75646 Da    PI: 6.8471
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00528.1.g00250.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.94.5e-352763682103
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl+k+y+++ +++l+ +isw + gnsfvv+d+++fa++vLp++Fkh+nf+SFvRQLn+YgF+kv++++         weF+
  Zmw_sc00528.1.g00250.1.am.mk 276 FLSKTYDLVTEPALDGVISWGAAGNSFVVWDPSTFARDVLPHHFKHNNFSSFVRQLNTYGFRKVHTDR---------WEFA 347
                                   9****************************************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkkse 103
                                   h+ F +++k+ll++i r++s+
  Zmw_sc00528.1.g00250.1.am.mk 348 HEDFLRDNKHLLKRIVRRRSS 368
                                   *****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.27E-33272365IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.9E-37272365IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-55272365IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.6E-31276365IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-16276299IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-16314326IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340315339IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-16327339IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MFASSCHVSR TNCQPSRGHR TAVTTDGLVT PSLRAGSLQA DPTTAPATRA PSQLSLAATD  60
TTRPTRTPSQ KYPVLSSPPS KTHRRSGILA RAFHPRYFYR PLPSAAPAHR LAVWPAAALP  120
SGRNPGRAPL RSLRTPAPPR VGVPPHAELT RTGAVHADRR QPRRTVCRFH PKPINAPPAH  180
PSPPVSSSDT RAHLQPSHAA AMNPDRARSD APDVPYPDAS ASMEALLVPK LEAEAALPLS  240
LPGPFVPLDQ VMPAEPVPDP PRPLEALLQG PQLPPFLSKT YDLVTEPALD GVISWGAAGN  300
SFVVWDPSTF ARDVLPHHFK HNNFSSFVRQ LNTYGFRKVH TDRWEFAHED FLRDNKHLLK  360
RIVRRRSSPT QQSSIQPASS GDSSLDPELH TLRREKIALL QEVARLKQEQ SQTIEHMSTL  420
NKRLDTAEDR QKQMISFLAK LLQNPAFVRQ LKLHREQKEI DSGRMKRKFL KHVPHGSIES  480
GESSSLHTGE GGSHFPASSH MAVQDDIADL QNFLLGDDDF NFGMNAENIG LEGVEEPEDI  540
GALVQGFNAQ DALGSGAELL EMPTSSAPLG QDPTIGRHKG KNVLCPGLDA TSSESDCLGS  600
LSENMGVLSA TMLETAPDDE PMWSMDTSAA LQSSCSGSSQ QPYSSLASDP YLMEIANKPE  660
KFWDLDFQPL DEGDLQLDKC AIDDPTLQQQ QQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-2426836811123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813039.10.0heat stress transcription factor A-3-like
SwissprotQ6H6Q70.0HSFA3_ORYSJ; Heat stress transcription factor A-3
TrEMBLA0A3L6QHX90.0A0A3L6QHX9_PANMI; Heat stress transcription factor A-3-like
STRINGSi016943m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90103041
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]
  3. Mittal D,Madhyastha DA,Grover A
    Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually.
    Plant Sci., 2012. 197: p. 102-13
    [PMID:23116677]