PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00548.1.g00420.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 446aa    MW: 47283.1 Da    PI: 8.0143
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00548.1.g00420.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH291.9e-09292339455
                                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  Zmw_sc00548.1.g00420.1.sm.mkhc 292 SHSLAERVRREKISQRMKLLQDLVPGC----NKVVVKAVMLDEIINYVQSLQ 339
                                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-15286357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.00E-10286343No hitNo description
PROSITE profilePS5088814.932288338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-16290356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-6292339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10294344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MNCGPPDQMP PATAPACFLN LNWDQSIATA GTAGEQHLDP ALSSMVSPPA SNSTPTAASD  60
GLALHGISPQ PQYGGTPLSS PPKLNLSMMV PFHHYPPPPQ VGGAGAAGLQ FLENLMPGHL  120
DQFLTDPGFA ERAARLSNFD GRAGGVGYGG SVPGQFSFPD AGPVGALKEL EFGNGRDESS  180
VSNPASASAE MALKGPSDGN ARKRKASGKG KGKDGPVSTS AKDLAKEESS GKRCKSGDES  240
NAAEENFTKG KAAQSSSENG GKKEGKNSTS KPPEPPKDYI HVRARRGEAT DSHSLAERVR  300
REKISQRMKL LQDLVPGCNK VVVKAVMLDE IINYVQSLQR QVEFLSMKLA TVNPQLDFNN  360
LPNFLAKDMQ QSCGLSENSH FPLETSGAPM PYISQPHQGN PLSCSLTNGM DNQSSMRPKA  420
RGRAKEQAEG TSKLRWEWIC GCFLAV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA to G box 5'-CACGTG-3' and to E-box 5'-CANNTG-3' (By similarity). Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000250|UniProtKB:Q8GY61, ECO:0000269|PubMed:24130508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971039.10.0transcription factor bHLH77
SwissprotQ9FJL42e-58BH078_ARATH; Transcription factor bHLH78
TrEMBLA0A0A9QTY70.0A0A0A9QTY7_ARUDO; Uncharacterized protein
STRINGSi001242m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]