PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00552.1.g00300.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 645aa    MW: 67273.5 Da    PI: 6.1273
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00552.1.g00300.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS291.22.9e-892886442374
                          GRAS   2 velLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseela 79 
                                   v++L e+A+  ++gd+  a+++Larl+ +   a  +g+p+ R a+yf+eAL+  l+       +a +p ++++++++ +l 
  Zmw_sc00552.1.g00300.1.am.mk 288 VDQLAEAAKLAEAGDAFGAREILARLNYRlpaAPAAGTPLLRSAFYFKEALRLALSP----NGEAPAPPASTPYDVVLKLG 364
                                   689*************************999455566******************99....55666777888899****** PP

                          GRAS  80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeelee 160
                                   a+k+fsevsP+l+f+hlt+ qa+l+++ g+++vH++Dfdi++G QW++L+q+La R +++  l++T+++sp+s++  el+ 
  Zmw_sc00552.1.g00300.1.am.mk 365 AYKAFSEVSPVLQFAHLTCVQAVLDELGGANCVHVLDFDIGMGEQWASLMQELAHR-RPATVLKVTALVSPASHHPLELQL 444
                                   *******************************************************9.7889******************** PP

                          GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvv 240
                                   ++e+L  fA+elgv f+f ++   ++++l++ eL  +  g+a+aV+l +   ++         + +++L+lvk+l +kvvv
  Zmw_sc00552.1.g00300.1.am.mk 445 IHENLYGFASELGVLFQFAAF---NIDTLDPAELVANAsGDAVAVHLPVGSAHVA--------AMPAILRLVKRLGAKVVV 514
                                   ********************9...9*********88888***********99998........4566************** PP

                          GRAS 241 vveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee 321
                                    v++ +d+++ +F++++++a++ +++l++s++a  ++ +e+++k+Er+l+++++++ v  ++++      +   Wr  + +
  Zmw_sc00552.1.g00300.1.am.mk 515 SVDHGCDRTELPFAAHLFQAFQSCVSLLESIDAV-GTGAETAAKIERFLVQPDVEQRVVGRHRA---GVDKPLPWRTVFAS 591
                                   *******************************997.8999*******************988887...7777889******* PP

                          GRAS 322 aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                   aGF pvp s++a++qa++ll+kv+  g+rve++ g l+l+W++ +LvsvSaWr
  Zmw_sc00552.1.g00300.1.am.mk 592 AGFVPVPASSFAESQAESLLKKVALMGFRVEKRGGVLCLYWQRSELVSVSAWR 644
                                   ****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.009261624IPR005202Transcription factor GRAS
PfamPF035149.9E-87288644IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MRGMLFAGST RDGHTGTLLL QQQHQQQHQD LGKVSGAAGL IWEPTSVLDQ RHSPSPSPPT  60
SASTLSSPLG SATAGVAALA GPNAKNHVAP PPPVAGAWPG GAAVEDATGG GKEDWQLTPF  120
DMGLDSAGEG WDPAGAVLSD APAPTGLGPD HTFLRWFIGG EDASAGMGGV MDLPVLELDH  180
APSMVSSAFG SNLTFIPAVE DTKPAPPFGH SPASFLLHHH PQPHAGLFGS HPSFDAAAAA  240
APKRSHPMTT APAPKLPPFP GAVASAGGFV PALKPKAEAA NDDEAAAVDQ LAEAAKLAEA  300
GDAFGAREIL ARLNYRLPAA PAAGTPLLRS AFYFKEALRL ALSPNGEAPA PPASTPYDVV  360
LKLGAYKAFS EVSPVLQFAH LTCVQAVLDE LGGANCVHVL DFDIGMGEQW ASLMQELAHR  420
RPATVLKVTA LVSPASHHPL ELQLIHENLY GFASELGVLF QFAAFNIDTL DPAELVANAS  480
GDAVAVHLPV GSAHVAAMPA ILRLVKRLGA KVVVSVDHGC DRTELPFAAH LFQAFQSCVS  540
LLESIDAVGT GAETAAKIER FLVQPDVEQR VVGRHRAGVD KPLPWRTVFA SAGFVPVPAS  600
SFAESQAESL LKKVALMGFR VEKRGGVLCL YWQRSELVSV SAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-2931964432375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002464970.10.0scarecrow-like protein 6
TrEMBLC5WSJ80.0C5WSJ8_SORBI; Uncharacterized protein
STRINGSb01g029650.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67232954