PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00561.1.g00100.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 91aa MW: 9967.35 Da PI: 7.3645

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00561.1.g00100.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.2	3.5e-09	21	58	15	54
HHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +iN+ ++L+ llP+ + +s ++ a++L++++ YI+sL Zmw_sc00561.1.g00100.1.sm.mk 21 QINDLVAKLQALLPElR---SSDRVPSAMVLQETCSYIRSL 58 8************66...99***************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.331	6	58	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0018	17	64	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-10	20	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.35E-6	20	62	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.5E-9	20	72	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-6	21	58	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009640	Biological Process	photomorphogenesis
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 91 aa Download sequence Send to blast
MSSRRPRSRA SGGAARISDE QINDLVAKLQ ALLPELRSSD RVPSAMVLQE TCSYIRSLHR 60 EVDDLSDRLS ELLATSDVSA AQAAIIRSLL M

Functional Description ? help Back to Top
Source	Description
UniProt	Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
UniProt	Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009389574.1	3e-41	PREDICTED: transcription factor ILI6-like
Swissprot	A2Z730	1e-36	ILI7_ORYSI; Transcription factor ILI7
Swissprot	Q338G6	1e-36	ILI7_ORYSJ; Transcription factor ILI7
TrEMBL	M0S5Y2	7e-40	M0S5Y2_MUSAM; Uncharacterized protein
STRING	Pavir.Ia01776.1.p	1e-41	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2675	33	78

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]