PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00562.1.g00160.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 436aa MW: 45293.4 Da PI: 5.7339

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00562.1.g00160.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.3	1.2e-07	332	372	9	54
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P a K++ a++L +A +Y++ L Zmw_sc00562.1.g00160.1.sm.mk 332 ARQRRERISERLRVLQKLVPGgA------KMDTASMLDEAANYLRFL 372 69****************966......*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.869	323	372	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.5E-11	328	381	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-13	328	382	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.0E-13	329	378	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.89E-11	329	377	No hit	No description
Pfam	PF00010	6.2E-5	332	372	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MDHSFSDMLL SNSAWSGAGD GGAVVLPTDL GSGGGSGVVD GSSMSVLERL VLDEALAAAI 60 LELQQQQQGI TPAAPKMPAG GGGVGDAVAF PAMSTVTAPY ADVDADVLQR QQHRHRHHAA 120 MEMVADYDLT PATAAVAAVT SALFTNAASA GDGGTLGDPR VLTGPETAVT TAVSVVVTTT 180 TKSQQCEEER DGGCFSGQKQ RRTSRKRKAA SSAPTQESSL CSLLASSTAG DGGGIQIAFS 240 TSAQQAPGAN KRSKPSLSSG SSSISFDGRI AGAGGEDPVY EPDTEALAQV KEMIYRAAAM 300 RPVSLGPEME EAGERPRRRN VRISSDPQTV AARQRRERIS ERLRVLQKLV PGGAKMDTAS 360 MLDEAANYLR FLKSQVRELQ TLDRRNYGNA NANSSSAATM AGPPLSYNNG HGGVPSFAFP 420 ATETLLEARG GVEQQI

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MDHSFSDMLL SNSAWSGAGD GGAVVLPTDL GSGGGSGVVD GSSMSVLERL VLDEALAAAI  60
LELQQQQQGI TPAAPKMPAG GGGVGDAVAF PAMSTVTAPY ADVDADVLQR QQHRHRHHAA  120
MEMVADYDLT PATAAVAAVT SALFTNAASA GDGGTLGDPR VLTGPETAVT TAVSVVVTTT  180
TKSQQCEEER DGGCFSGQKQ RRTSRKRKAA SSAPTQESSL CSLLASSTAG DGGGIQIAFS  240
TSAQQAPGAN KRSKPSLSSG SSSISFDGRI AGAGGEDPVY EPDTEALAQV KEMIYRAAAM  300
RPVSLGPEME EAGERPRRRN VRISSDPQTV AARQRRERIS ERLRVLQKLV PGGAKMDTAS  360
MLDEAANYLR FLKSQVRELQ TLDRRNYGNA NANSSSAATM AGPPLSYNNG HGGVPSFAFP  420
ATETLLEARG GVEQQI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	332	337	RQRRER

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008656601.1	1e-122	transcription factor bHLH87
Refseq	XP_025814680.1	1e-122	transcription factor LATE FLOWERING-like
TrEMBL	A0A3L6STE1	1e-134	A0A3L6STE1_PANMI; Transcription factor bHLH87-like
STRING	Pavir.Ea01618.1.p	1e-124	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1546	37	106