PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00563.1.g00390.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 356aa    MW: 37822.8 Da    PI: 6.5047
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00563.1.g00390.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.23e-27128188259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                   dDg++WrKYGqK++ g++fpr+YYrCt++   gC ++k+v+rs++d  v+++tY+geH ++
  Zmw_sc00563.1.g00390.1.sm.mk 128 DDGFSWRKYGQKDILGAKFPRGYYRCTYRgtqGCLATKQVQRSDSDLCVFDVTYQGEHICH 188
                                   8***************************99889*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-26120189IPR003657WRKY domain
PROSITE profilePS5081122.768122185IPR003657WRKY domain
SuperFamilySSF1182907.19E-24126189IPR003657WRKY domain
SMARTSM007743.1E-38127189IPR003657WRKY domain
PfamPF031069.5E-25128188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009751Biological Processresponse to salicylic acid
GO:0010193Biological Processresponse to ozone
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MQDGAGGGGG EGGMHLLLSI LANGEDQARL LAELPADDPR LGAEHYRAAA RRLQCTLGRA  60
MSVARAIEAA ASSRGTDSPR SADEGSGGSG TVPVEALERP AVCKRRKGLP RWTAKFRVPD  120
ANLEATPDDG FSWRKYGQKD ILGAKFPRGY YRCTYRGTQG CLATKQVQRS DSDLCVFDVT  180
YQGEHICHQK PRHASASVAG ASHHHDMSQP PPPPDPSTEL LPGFTERLKV ETTTDQAPLH  240
ASSSRDQDHA VSASPFAFHA GGVAPDEAFA SVPAGASYYA VPHCLEPGSG YDDYGYDLPR  300
MRGAGSELGE VVSRATAPVA ADPSNAGFEY SLYHHGEFDP HLPFAPSGGG CGSRHW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-201291911879Disease resistance protein RRS1
5w3x_D2e-201291911879Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00525DAPTransfer from AT5G24110Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811264.11e-117probable WRKY transcription factor 53
TrEMBLA0A2S3HLN71e-116A0A2S3HLN7_9POAL; Uncharacterized protein
STRINGSi008812m1e-109(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133402730