PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00566.1.g00410.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 237aa MW: 25131.4 Da PI: 9.632

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00566.1.g00410.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.9	4.3e-14	111	162	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+ +N+ ++ Lr l+P++ + ++ + a+++ A++Y+k+L+ Zmw_sc00566.1.g00410.1.am.mk 111 QRMTHIAVERNRRRLMNDHLASLRALIPPS---YIPRGDQATVVGGAIDYVKQLE 162 79**************************...9*****************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.28E-15	102	171	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.06E-13	109	165	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.3E-14	109	165	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.072	110	161	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.4E-11	111	162	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-9	116	167	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MVVMEQWADH QAVSTSAATA QMPFLALLQG AVVENDDDGL RKRAASFAAC AAAADLDLFE 60 SCVTQAAAVT VASSAAPATR ADSRRRKRPR PRPRAAPQQE KRKKPEEAES QRMTHIAVER 120 NRRRLMNDHL ASLRALIPPS YIPRGDQATV VGGAIDYVKQ LEQQLVALQA EAAARRGCCV 180 GVGAVATAAS AASDGVFVSP QYASYSESPR GCAAGVDVEA TGAVGGHVRV RVAGRRW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	83	93	RRRKRPRPRPR
2	85	91	RKRPRPR
3	85	103	RKRPRPRPRAAPQQEKRKK
4	86	90	KRPRP
5	111	122	RMTHIAVERNRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025798239.1	3e-73	transcription factor bHLH57-like
TrEMBL	A0A1D6PKX5	9e-88	A0A1D6PKX5_MAIZE; Putative HLH DNA-binding domain superfamily protein
STRING	OPUNC03G01600.1	6e-76	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7957	33	44