PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00567.1.g00210.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ZF-HD

Protein Properties

Length: 227aa MW: 23835.7 Da PI: 8.7019

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00567.1.g00210.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	84.5	1.2e-26	10	60	4	57
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +Y+eC++NhAa+lG++a DGC+E++p+ ++++aa+ CaACgCHRnFHR+ Zmw_sc00567.1.g00210.1.sm.mk 10 EVYRECMRNHAANLGTYASDGCCEYTPD---DAHPAAMLCAACGCHRNFHRKAF 60 68***********************8...678***************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.2E-21	11	59	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	4.3E-20	12	58	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	9.0E-20	12	58	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	22.059	12	59	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	3.78E-15	103	176	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-26	105	176	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	9.9E-27	115	176	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MEQHQERPRE VYRECMRNHA ANLGTYASDG CCEYTPDDAH PAAMLCAACG CHRNFHRKAF 60 LDAVSGALGA ASPHSSPMLR SPGAAPAGYG MHMGVAPTAA AGMGGGDAHG SAGRRRTRTK 120 FTEEQKERML RFAERLGWRM PKREPGRALG DDDVARFCRE IGVTRQVFKV WMHNHKVGGG 180 GAGAGGAAQT SSSTTRGGGG GAGGGGGSMS PAIGEDDEEV RGSRMSM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh5_A	1e-18	114	183	17	80	ZF-HD homeobox family protein
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025798159.1	4e-96	zinc-finger homeodomain protein 11-like
Swissprot	A2XLF4	6e-87	ZHD11_ORYSI; Zinc-finger homeodomain protein 11
Swissprot	Q10DV5	6e-87	ZHD11_ORYSJ; Zinc-finger homeodomain protein 11
TrEMBL	A0A2T8I0V5	1e-94	A0A2T8I0V5_9POAL; Uncharacterized protein
STRING	Sb01g010020.1	2e-95	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9204	32	43