PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00571.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Protein Properties

Length: 253aa MW: 27776.1 Da PI: 7.0661

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00571.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	56.5	5e-18	69	158	2	99
EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 fkv p+ + rl +p f e+ ++ ++ ++l+ +sg +W+v l + +s++ +t+GWkeF+ ++ L +g f+v Zmw_sc00571.1.g00060.1.sm.mk 69 FKVYFPEQS--AVRLKIPPAFH-EYvKEA--PDRVVSLKGPSGHTWKVVL--TSGSQGLSFTQGWKEFACDHSLLAGHFMV 142 555544433..34799***8.562444..3458***********..************************* PP EEE-SSSEE..EEEEE-S CS B3 82 Fkldgrsefelvvkvfrk 99 F++dg+sef v vf++ Zmw_sc00571.1.g00060.1.sm.mk 143 FTYDGQSEF--SVDVFSA 158 **99999..9999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	12.999	66	159	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.0E-21	66	160	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.16E-19	67	159	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.54E-16	68	157	No hit	No description
SMART	SM01019	3.6E-14	68	159	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.5E-15	77	158	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MGRKNPQGGS GAAPAAAATE RGKGKRTEEG SAGRKERRSG REQRKVTEAA REEEEEEGGA 60 PVAAGEQFFK VYFPEQSAVR LKIPPAFHEY VKEAPDRVVS LKGPSGHTWK VVLTSGSQGL 120 SFTQGWKEFA CDHSLLAGHF MVFTYDGQSE FSVDVFSASG VKDMAAPNVE PRKEPVIKQE 180 EEQDCVVDMD ALDTPEVSAD LPPVEVDRRN TRKRVRQMND AMEGDTALKT KGQSSVQKKH 240 EKRKPKAAAE YPV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025827675.1	1e-55	B3 domain-containing protein Os11g0197600-like
Refseq	XP_025827676.1	1e-55	B3 domain-containing protein Os11g0197600-like
TrEMBL	A0A3L6PN77	6e-57	A0A3L6PN77_PANMI; B3 domain-containing protein
STRING	Pavir.Ha01581.1.p	1e-51	(Panicum virgatum)
STRING	Pavir.J06349.1.p	2e-52	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4461	37	66