PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00573.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Protein Properties

Length: 226aa MW: 24573.8 Da PI: 4.5846

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00573.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	32.9	1.2e-10	130	176	42	90
TS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 42 sgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 +grsW ++ + k ++ + + W++Fv +n+L++gD +vF+l+g +e+ Zmw_sc00573.1.g00020.1.sm.mk 130 RGRSWATSYCGDLKCKK--FDRAWRDFVVDNRLRVGDACVFELVGADET 176 69*****66655555..89********************987554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.1E-14	94	176	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	8.44E-13	95	175	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.86E-11	98	172	No hit	No description
Pfam	PF02362	2.6E-8	130	176	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.418	130	199	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
METPASSACP WKQLPEDASA KWELDAGIKP KLPDPCTTFK LDAGVKPKLP DACATFKPEA 60 GVEPKPEPCE EDAPPLSPLA GDAADDDWEI TPVSGNHPFF TTVMSQSHVQ KSLQLRHLPA 120 ARVPAVLLCR GRSWATSYCG DLKCKKFDRA WRDFVVDNRL RVGDACVFEL VGADETEAEA 180 EAEGRRNGGE KAVVVFRVQV LRGGLPEEIT SKGATSDEPL VIVDYD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025811196.1	1e-71	B3 domain-containing protein Os06g0112300-like isoform X1
Swissprot	Q9LHY9	7e-38	Y6112_ORYSJ; B3 domain-containing protein Os06g0112300
TrEMBL	A0A2T8JF47	4e-70	A0A2T8JF47_9POAL; Uncharacterized protein
STRING	Pavir.Db02470.1.p	5e-65	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12046	19	33

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]