PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00573.1.g00470.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 543aa    MW: 57388.5 Da    PI: 5.0369
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00573.1.g00470.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS50.83.1e-16284354271
                          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetse 71 
                                   v +L++c + +++ d+++a+ +Larl e+asp+g +pm+R+aayf+eALa r++r++++l++  pp+e ++
  Zmw_sc00573.1.g00470.1.sm.mk 284 VGALTACTDSLATCDQHAADYYLARLGEMASPAGpTPMHRVAAYFAEALAIRVVRMWPHLFDVTPPRELTD 354
                                   678************************************************************99998875 PP
2GRAS128.76.7e-40361513224374
                          GRAS 224 rdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacega 303
                                     ++L lv+s+ + ++ + e+e  +ns+++ +rf++al+yy+a fd++ +a+l+ +s +r+k E++ ++rei+n+va eg+
  Zmw_sc00573.1.g00470.1.sm.mk 361 LADFLGLVRSTGAAILLLGEHEDALNSGRWEARFARALRYYAAAFDAVdAAGLAYASPARTKAEEM-FAREIRNAVAFEGT 440
                                   567*********************************************9999**************.************** PP

                          GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee..sgslvlgWkdrpLvsvSaWr 374
                                   +r+erh t++ Wr+r+e++GFk++ +++++a+q +l+ r+++   yrv+ +   ++l+l W ++++++vSaW+
  Zmw_sc00573.1.g00470.1.sm.mk 441 DRFERHDTFGGWRRRMEDCGFKNAGIGDREAMQGRLISRMFAPGNYRVQAQgdGEALTLQWLNQAMYTVSAWT 513
                                   ******************************************555***9654256677**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035141.1E-13284354IPR005202Transcription factor GRAS
PfamPF035142.3E-37361513IPR005202Transcription factor GRAS
PROSITE profilePS5098512.683367491IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MEVSACRSLG LAVVVAAVRA LRHGMLSLVQ EEEEEEEEEE GDEEEGNKFL LGTSHPAVSP  60
ISGMLAGCSF SSSRHQMSTT PRFDILQCGF SKRSNRGGDG AAAPRVAADD PRAGGGNCSF  120
RAHPAPVTQA VSWGAKQEPS GNVAGGFWER SRAVKRAHEE DAVEEYGGPT VRAKRTRRGG  180
DGDEVWFHQS IAGTVQQAAP GEGEESEEEK VFLVPSAATF PHGMAAAGPS LAAAKQEFSN  240
SPSPASSGGT DGGGTSAVPP PPEVHARNGV PAHGEAGRET MELVGALTAC TDSLATCDQH  300
AADYYLARLG EMASPAGPTP MHRVAAYFAE ALAIRVVRMW PHLFDVTPPR ELTDGASGAS  360
LADFLGLVRS TGAAILLLGE HEDALNSGRW EARFARALRY YAAAFDAVDA AGLAYASPAR  420
TKAEEMFARE IRNAVAFEGT DRFERHDTFG GWRRRMEDCG FKNAGIGDRE AMQGRLISRM  480
FAPGNYRVQA QGDGEALTLQ WLNQAMYTVS AWTPASDGDA GGSTVSASLS VSVSTTASHS  540
QQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-14312516195382Protein SCARECROW
5b3h_A2e-14312516194381Protein SCARECROW
5b3h_D2e-14312516194381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22685166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269|PubMed:19220793}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964401.11e-129protein DWARF AND LOW-TILLERING
RefseqXP_025812393.11e-129protein DWARF AND LOW-TILLERING
SwissprotQ9LWU91e-111DLT_ORYSJ; Protein DWARF AND LOW-TILLERING
TrEMBLJ3MAW71e-153J3MAW7_ORYBR; Uncharacterized protein
STRINGOB06G11610.11e-154(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64043455
Publications ? help Back to Top
  1. Tong H,Chu C
    Roles of DLT in fine modulation on brassinosteroid response in rice.
    Plant Signal Behav, 2009. 4(5): p. 438-9
    [PMID:19816111]
  2. Li W, et al.
    Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice.
    Planta, 2010. 232(6): p. 1383-96
    [PMID:20830595]
  3. Tong H, et al.
    DWARF AND LOW-TILLERING acts as a direct downstream target of a GSK3/SHAGGY-like kinase to mediate brassinosteroid responses in rice.
    Plant Cell, 2012. 24(6): p. 2562-77
    [PMID:22685166]
  4. Zhang C,Bai MY,Chong K
    Brassinosteroid-mediated regulation of agronomic traits in rice.
    Plant Cell Rep., 2014. 33(5): p. 683-96
    [PMID:24667992]
  5. Yang C,Shen W,He Y,Tian Z,Li J
    OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice.
    PLoS Genet., 2016. 12(6): p. e1006118
    [PMID:27332964]