PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00583.1.g00290.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 197aa MW: 20525.3 Da PI: 7.6598

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00583.1.g00290.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.6	4.3e-43	22	121	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrr+Ca++Cv+apyfp ++p+kfan+hk+FGasnv+kll+++p ++r da+sslvyeA+ar+rdPvyG+v+ i+ Zmw_sc00583.1.g00290.1.sm.mk 22 PCAACKLLRRRCAAGCVFAPYFPPAEPRKFANMHKVFGASNVSKLLQDIPVQHRGDAVSSLVYEANARVRDPVYGCVAAIS 102 7****************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 +lqqq+e+l+++lal+++e Zmw_sc00583.1.g00290.1.sm.mk 103 SLQQQVETLQTQLALAQAE 121 *************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.963	21	122	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-42	22	119	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MRDEVAVAGS GGGGGGAGAT APCAACKLLR RRCAAGCVFA PYFPPAEPRK FANMHKVFGA 60 SNVSKLLQDI PVQHRGDAVS SLVYEANARV RDPVYGCVAA ISSLQQQVET LQTQLALAQA 120 EMVKLSMSNA DMAHRLKAVC GSCGGGGSST STGSPSSMSS PKMERTEAHC ECNATPQLLD 180 TVVDQPYSVD GSLLWPY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-49	18	145	7	121	LOB family transfactor Ramosa2.1
5ly0_B	1e-49	18	145	7	121	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002466719.1	2e-72	LOB domain-containing protein 4 isoform X1
Swissprot	Q8LBW3	9e-54	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A3L6TSK8	2e-75	A0A3L6TSK8_PANMI; LOB domain-containing protein 4-like
STRING	Sb01g012810.1	7e-72	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]