PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00583.1.g00380.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

FAR1

Protein Properties

Length: 111aa MW: 12636.2 Da PI: 9.2137

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00583.1.g00380.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	87.7	1.7e-27	12	109	2	86
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvk 69 Yn YA++vGFs+r+s ++ s r+g++++r+fvC keg+r+ ++k+ + k rrt+a+tr+gCka+++vk Zmw_sc00583.1.g00380.1.am.mk 12 LYNVYAHRVGFSTRISVMHWSPRDGTVMSRQFVCAKEGFRTYQSKSelaradagtgdedSGKGRRTHAVTRVGCKAMIRVK 92 6*****************************************99*******99999*************** PP FAR1 70 kekdgkwevtkleleHn 86 k+++g+w vtkle+ Hn Zmw_sc00583.1.g00380.1.am.mk 93 KQDNGRWTVTKLETAHN 109 **************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-25	12	109	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 111 aa Download sequence Send to blast
MEFDDEEDAW PLYNVYAHRV GFSTRISVMH WSPRDGTVMS RQFVCAKEGF RTYQSKSELA 60 RADAGTGDED SGKGRRTHAV TRVGCKAMIR VKKQDNGRWT VTKLETAHNL P

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631605.1	9e-56	protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBL	A0A0D9ZB84	2e-56	A0A0D9ZB84_9ORYZ; Uncharacterized protein
TrEMBL	A0A1E5WFJ1	8e-56	A0A1E5WFJ1_9POAL; Protein FAR1-RELATED SEQUENCE 5
STRING	OGLUM03G28710.1	4e-57	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967