PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00587.1.g00120.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 636aa MW: 69591.9 Da PI: 9.3265

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00587.1.g00120.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	113.8	1.1e-35	380	480	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 aCaaCk+ r +C+++C+la+yfpaeq++ f vh+lFG++++l++l+++p+e ++am+++++eAeara+dPv+G+vg+i+ Zmw_sc00587.1.g00120.1.am.mk 380 ACAACKYRRARCTPECPLARYFPAEQNHLFVSVHRLFGVDKILRTLREVPPEYAREAMRTMIFEAEARASDPVSGCVGIIR 460 7****************************************************************************** PP DUF260 82 klqqqleqlkaelallkeel 101 ++q++++ ++ el +l++++ Zmw_sc00587.1.g00120.1.am.mk 461 QYQHEVSVANDELMALRHKI 480 ***********9999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.621	379	480	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.8E-34	380	477	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 636 aa Download sequence Send to blast
MRTKGRSEEL LERIVLSFFT EELKQQRHFE GNTRNSVLLK AIETGQYEER REARSPAPWD 60 RLKKQRHAKT LKKNATPLLD AIDAPFKFKP RTLLPFSPRD ELLYLSPTSP RLLTVTAFRA 120 GLHGRHSRIG GNSIECCICI EVSSPATVRA IQCRGRIALG KQRPVTDEKG SAARFSGRTP 180 NLSGSGNHDD DDVSERSPPW NQSDSGIPRS APVAHREREI AEEARTASAG SWVVRVVNCC 240 GEEQQWRTCS SPPLAASHTS TGQAVVHDGN WSMANGHWRA APSPFGPWKE DPIELALYSR 300 HNFSRRAGDA TREERGCLQR RRSRRPRLRR PPCTMSSSSN PPPDHTDGSD ASHVGSASSS 360 PPPSGAAGSS ERRQNYARSA CAACKYRRAR CTPECPLARY FPAEQNHLFV SVHRLFGVDK 420 ILRTLREVPP EYAREAMRTM IFEAEARASD PVSGCVGIIR QYQHEVSVAN DELMALRHKI 480 ATCRSRADGG LPLADPAIPA VPEQDNVRTR DALDGGGAAQ EPAHSRQPAA GGLPLAYPAT 540 RAAPEQNNVR TTDELDSGGA AQEPVHGRQP AAGGLPLAGA GVAVVDDQQQ HHNAHKAPDL 600 EVTIAEHQYT TPVMAASSSR KRRKVAAPVV KHDADP

Sequence ? help Back to Top

Protein Sequence Length: 636 aa Download sequence Send to blast

MRTKGRSEEL LERIVLSFFT EELKQQRHFE GNTRNSVLLK AIETGQYEER REARSPAPWD  60
RLKKQRHAKT LKKNATPLLD AIDAPFKFKP RTLLPFSPRD ELLYLSPTSP RLLTVTAFRA  120
GLHGRHSRIG GNSIECCICI EVSSPATVRA IQCRGRIALG KQRPVTDEKG SAARFSGRTP  180
NLSGSGNHDD DDVSERSPPW NQSDSGIPRS APVAHREREI AEEARTASAG SWVVRVVNCC  240
GEEQQWRTCS SPPLAASHTS TGQAVVHDGN WSMANGHWRA APSPFGPWKE DPIELALYSR  300
HNFSRRAGDA TREERGCLQR RRSRRPRLRR PPCTMSSSSN PPPDHTDGSD ASHVGSASSS  360
PPPSGAAGSS ERRQNYARSA CAACKYRRAR CTPECPLARY FPAEQNHLFV SVHRLFGVDK  420
ILRTLREVPP EYAREAMRTM IFEAEARASD PVSGCVGIIR QYQHEVSVAN DELMALRHKI  480
ATCRSRADGG LPLADPAIPA VPEQDNVRTR DALDGGGAAQ EPAHSRQPAA GGLPLAYPAT  540
RAAPEQNNVR TTDELDSGGA AQEPVHGRQP AAGGLPLAGA GVAVVDDQQQ HHNAHKAPDL  600
EVTIAEHQYT TPVMAASSSR KRRKVAAPVV KHDADP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-22	377	500	8	131	LOB family transfactor Ramosa2.1
5ly0_B	1e-22	377	500	8	131	LOB family transfactor Ramosa2.1

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	318	324	QRRRSRR