PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00594.1.g00080.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 576aa    MW: 62785 Da    PI: 10.5716
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00594.1.g00080.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-18401450255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                    y+GVr+++ +g+WvAeIr p++   r+r +lg+f++a++Aa a+++a+ +l+g
  Zmw_sc00594.1.g00080.1.am.mk 401 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDSADDAALAYDKAAFRLRG 450
                                   59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.04E-27400458No hitNo description
SMARTSM003803.0E-35401464IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.3E-31401459IPR001471AP2/ERF domain
PROSITE profilePS5103222.787401458IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-21401458IPR016177DNA-binding domain
PRINTSPR003671.4E-9402413IPR001471AP2/ERF domain
PfamPF008472.6E-12402450IPR001471AP2/ERF domain
PRINTSPR003671.4E-9424440IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MDPSTGRQLT STHAGRATQH HPHDASRRLC HIREARREIE IEQHRRHASV VTARSTAPTP  60
RPRRPRSVSW QALLAAAAAA AKCRHGAGCF ISVAIPFAEM RKLSRWRWRS GATTIQRVRD  120
GDHERGNHLP PRRGPARRRQ QPPLFTARSF VHSARKAATR CRDDLTSRAI KTPAPEATSP  180
QERRLRPHHT TNTKLLLAPT HKPSPPRSQP NPVHFPGEAE RSVSTSHHHG DDDDRDRCRR  240
QLSSSSSSSS SDQELMKALE PFIRSASPTS STSTSPFSNS YSYSYSYSYT TSALPQDSYC  300
FPASSSYTAL PPPPAPTATS FSQLPPLPPS SSYASPASYT APADAATGLT HLSQAQVQVQ  360
QIQAQLLLQQ QQRSLAASFL GPRAQPMKHA GVPPSAAAGK LYRGVRQRHW GKWVAEIRLP  420
RNRTRLWLGT FDSADDAALA YDKAAFRLRG DAARLNFPSL RRGGAHLAGP LDASVDAKLT  480
AICLSLDAST NKPRTTAAHP DSPKASASTT TSEGDESVHS AGSPPPGSAP SQQQQPAPPL  540
PEMACLDFTE APWDESATFH LNTFPSCDID WDAILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-20397458163ATERF1
3gcc_A1e-20397458163ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008659105.11e-115ethylene-responsive transcription factor RAP2-13
TrEMBLK7W5001e-114K7W500_MAIZE; Putative AP2/EREBP transcription factor superfamily protein
STRINGPavir.Da01302.1.p1e-130(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203