PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00600.1.g00230.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 209aa MW: 23155.7 Da PI: 5.2026

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00600.1.g00230.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.9	4.1e-07	4	51	3	47
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 +WT E + + a + + ++ +W+ +art+g g+t ++ ++ k+ Zmw_sc00600.1.g00230.1.am.mk 4 SWTVKENKVFETALATFDKDtpdRWENVARTVGGGKTVDDVERHYAKL 51 7********************************************886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	4.6E-4	1	54	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	9.57	1	56	IPR017884	SANT domain
SuperFamily	SSF46689	1.04E-9	3	55	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MSSSWTVKEN KVFETALATF DKDTPDRWEN VARTVGGGKT VDDVERHYAK LIQDLREMEA 60 EGLMGSLFAD GGGSSKDDEE QRWLRSSGTC DCCRDKNAKP SVVPKRLFGG ERFCCVTAGA 120 SIVADVYTRP HKGSQRPDGE ADVDHQCRSG TQGVEVEAES LRRHQAEGQR GAMGAIIGQG 180 GGVMQVIIGW KVRWLEWRDE YGDEVDKQR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	2e-17	5	81	11	86	RADIALIS

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP270	38	230