PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00602.1.g00300.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 411aa MW: 43948 Da PI: 9.9909

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00602.1.g00300.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	113.5	1.4e-35	226	315	1	89
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 +C aCk+lrrkCa++Cv+ap+f+ae+ +++fa++hk+FGasn kll+++ + +r++a+++++yeA+ar+rdPvyG+v++i Zmw_sc00602.1.g00300.1.am.mk 226 PCGACKFLRRKCAAECVFAPHFCAEDgTAQFAAIHKVFGASNAAKLLQQVAPGDRSEAAATVTYEAQARLRDPVYGCVAHI 306 7*********************9989************************************************* PP DUF260 81 lklqqqleq 89 ++lqqq+ + Zmw_sc00602.1.g00300.1.am.mk 307 FALQQQVIS 315 ****865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.233	225	326	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-34	226	314	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MLEALIESSM IKEVLMVSYF GSFGRQHVQI SAELDRPRNL LQSTNKLASV YQTKGEAINK 60 RSKRTRGRRQ EKAAESTYYE LGRGQTRPSK KAGGIRRTKV AAAALSSGVP AHGRRNRHPL 120 LIDCPFPSPL RIDGEPTATR PPPPSPIASS WRHPPLPESQ LLLKLGHLGL VLNEVSFKVG 180 HPLRAYSSNT GVGWDVGGQK RGARAAVRES ETAMASSAGG GAPGSPCGAC KFLRRKCAAE 240 CVFAPHFCAE DGTAQFAAIH KVFGASNAAK LLQQVAPGDR SEAAATVTYE AQARLRDPVY 300 GCVAHIFALQ QQVISNTRLY LKVHSLGLLA APPAVATLQV QVLQAKAQVA QTVATAGAQA 360 AGSPLLQRWQ MEPESLSTQS SGCYSAPSGD GSASMQEMYC FGEQEEGSYT R

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MLEALIESSM IKEVLMVSYF GSFGRQHVQI SAELDRPRNL LQSTNKLASV YQTKGEAINK  60
RSKRTRGRRQ EKAAESTYYE LGRGQTRPSK KAGGIRRTKV AAAALSSGVP AHGRRNRHPL  120
LIDCPFPSPL RIDGEPTATR PPPPSPIASS WRHPPLPESQ LLLKLGHLGL VLNEVSFKVG  180
HPLRAYSSNT GVGWDVGGQK RGARAAVRES ETAMASSAGG GAPGSPCGAC KFLRRKCAAE  240
CVFAPHFCAE DGTAQFAAIH KVFGASNAAK LLQQVAPGDR SEAAATVTYE AQARLRDPVY  300
GCVAHIFALQ QQVISNTRLY LKVHSLGLLA APPAVATLQV QVLQAKAQVA QTVATAGAQA  360
AGSPLLQRWQ MEPESLSTQS SGCYSAPSGD GSASMQEMYC FGEQEEGSYT R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-29	224	313	9	97	LOB family transfactor Ramosa2.1
5ly0_B	8e-29	224	313	9	97	LOB family transfactor Ramosa2.1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10262	33	44