PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00620.1.g00090.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 114aa MW: 13117.7 Da PI: 7.7839

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00620.1.g00090.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.8	5.9e-09	14	61	3	47
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 W+ d+l+ +a + + ++ +W+ + r mg +++ ++++ ++qk+ Zmw_sc00620.1.g00090.1.am.mk 14 EWSRSQDKLFERALAVYDKDtpdRWHNVVRFMGGTKSVEEVRRHYQKL 61 7*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	5.993	7	62	IPR017877	Myb-like domain
SMART	SM00717	1.0E-8	11	64	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.59E-11	13	70	IPR009057	Homeodomain-like
CDD	cd00167	1.45E-7	14	61	No hit	No description
Pfam	PF00249	1.7E-6	14	61	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence Send to blast
MTSNNRRSSP SPSEWSRSQD KLFERALAVY DKDTPDRWHN VVRFMGGTKS VEEVRRHYQK 60 LEEDVARIES GEVPFHWYGG AAPPPVTTVQ RADAGSSFPF FFLLPLISRQ DLTF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	5e-20	15	78	11	73	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818796.1	3e-38	protein RADIALIS-like 3 isoform X1
Swissprot	Q1A173	7e-26	RADL6_ARATH; Protein RADIALIS-like 6
TrEMBL	A0A2T7DJA1	7e-37	A0A2T7DJA1_9POAL; Uncharacterized protein
STRING	Pavir.J13204.1.p	3e-39	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP270	38	230