PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00620.1.g00100.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 272aa    MW: 29907.8 Da    PI: 8.3912
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00620.1.g00100.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.25.1e-1089138147
                                   TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                                   r  WT++ d+l+ +a + + ++   +W+ Iar +g g++  ++k ++q +
  Zmw_sc00620.1.g00100.1.am.mk  89 RSQWTKQQDKLFEQALAVYDKEtpdRWHNIARAVGGGKSVDEVKTHYQLL 138
                                   679*****************99*************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007177.2E-988141IPR001005SANT/Myb domain
PROSITE profilePS500906.81889139IPR017877Myb-like domain
PfamPF002495.3E-789137IPR001005SANT/Myb domain
SuperFamilySSF466894.56E-1290146IPR009057Homeodomain-like
CDDcd001671.69E-692139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MRDPPLSSFV GRRSLFLGDR WHSFWSCTLR LTDALFSSLS RVTHHERTTL QGSSYPAGRP  60
GPITEQGPSS LDQTVVGSLH ISMASMSMRS QWTKQQDKLF EQALAVYDKE TPDRWHNIAR  120
AVGGGKSVDE VKTHYQLLVH DVGRIEKGEV AFPAYRCPGV GSMPMGGYEA DRKSCPLPSS  180
SFPASSPNIG EHHPSLMTSF NTTGAANPNP TKSIVLWRAC VEATMSICFT GTFLQGLVLG  240
VSTSQCQVKA SILHDWDSSH TRLASITQWR DP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-21921631180RADIALIS
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3446934