PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00621.1.g00370.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 727aa MW: 78493.1 Da PI: 8.267

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00621.1.g00370.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	77.4	1.7e-24	531	592	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +dDg+ WrKYGqKe+ se+pr Y+rCt++ gC++k++v+rs+ +p++ itY geH+++ Zmw_sc00621.1.g00370.1.am.mk 531 MDDGFIWRKYGQKEICYSEYPRLYFRCTYKddrGCMAKRQVQRSSANPSLYLITYFGEHTCR 592 59*************************99999************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51473	11.166	174	274	IPR002902	Gnk2-homologous domain
Pfam	PF01657	5.7E-8	188	271	IPR002902	Gnk2-homologous domain
Gene3D	G3DSA:2.20.25.80	1.9E-23	525	592	IPR003657	WRKY domain
PROSITE profile	PS50811	20.989	526	589	IPR003657	WRKY domain
SuperFamily	SSF118290	7.59E-23	527	593	IPR003657	WRKY domain
SMART	SM00774	2.5E-35	531	593	IPR003657	WRKY domain
Pfam	PF03106	7.8E-23	532	592	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 727 aa Download sequence Send to blast
LSLFSPGPKP RISHAIPFLG YGNGKSRTSS NRHRVQLLPK CNDNQKVRNI AVTLLEQGDE 60 SPRRAVLSPC PFRAQLTSFT RRSIGPATSF PGLPAIDASQ CFRPLLRVGI TGKWETPGHR 120 SLPSSHQQPS LKQRSVRARQ AAMALRTVPR SLPLAVALVL VACRCEGDGG VGCAKPQTAT 180 CAPVTDCDGT AFRAVVAPLL AELPSAAAAT GFASMRSAGA EGLQAFGLCF GEPDGCLACL 240 SASAAAVIET CGNDTRRAGV WRDGCLLAYT DGPRDQAVVD LAMALADPKE QSFWKKALSI 300 LYYALAAVGL VAVVLLLCLS IAAFAIAQSL VRHTAAGRVA AAGHGGEGVT AYFVATDGRS 360 PIWSVGVQAR FYYYSTPYNP MPSTSLVGLR ARPFRNQPPP YHGAKGSQGF GKEGEALWWS 420 LPQGEHRGSR ALSNSDESQD LMLGGRGRDS AAVLQVLLGR HPAVPTADEM PDGALRDLTE 480 QILRCCDRAL AALRSASRKR SLANAHLAPS SKRTRVSCGE KGRRVEKQAT MDDGFIWRKY 540 GQKEICYSEY PRLYFRCTYK DDRGCMAKRQ VQRSSANPSL YLITYFGEHT CRRHDTEPPA 600 PAPCVINFGS STCGDGHQPN VLPWRPSCGD DAPVVSETSD LCNSQEEMLA ALMEQSTPVS 660 EQVGKGSPGW DNLDGCLDWE FADDDSSFDL MMRTTGRADD ADEKQNDYWL QDVHAAMLNR 720 VALVLQL

Sequence ? help Back to Top

Protein Sequence Length: 727 aa Download sequence Send to blast

LSLFSPGPKP RISHAIPFLG YGNGKSRTSS NRHRVQLLPK CNDNQKVRNI AVTLLEQGDE  60
SPRRAVLSPC PFRAQLTSFT RRSIGPATSF PGLPAIDASQ CFRPLLRVGI TGKWETPGHR  120
SLPSSHQQPS LKQRSVRARQ AAMALRTVPR SLPLAVALVL VACRCEGDGG VGCAKPQTAT  180
CAPVTDCDGT AFRAVVAPLL AELPSAAAAT GFASMRSAGA EGLQAFGLCF GEPDGCLACL  240
SASAAAVIET CGNDTRRAGV WRDGCLLAYT DGPRDQAVVD LAMALADPKE QSFWKKALSI  300
LYYALAAVGL VAVVLLLCLS IAAFAIAQSL VRHTAAGRVA AAGHGGEGVT AYFVATDGRS  360
PIWSVGVQAR FYYYSTPYNP MPSTSLVGLR ARPFRNQPPP YHGAKGSQGF GKEGEALWWS  420
LPQGEHRGSR ALSNSDESQD LMLGGRGRDS AAVLQVLLGR HPAVPTADEM PDGALRDLTE  480
QILRCCDRAL AALRSASRKR SLANAHLAPS SKRTRVSCGE KGRRVEKQAT MDDGFIWRKY  540
GQKEICYSEY PRLYFRCTYK DDRGCMAKRQ VQRSSANPSL YLITYFGEHT CRRHDTEPPA  600
PAPCVINFGS STCGDGHQPN VLPWRPSCGD DAPVVSETSD LCNSQEEMLA ALMEQSTPVS  660
EQVGKGSPGW DNLDGCLDWE FADDDSSFDL MMRTTGRADD ADEKQNDYWL QDVHAAMLNR  720
VALVLQL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	7e-21	531	592	8	69	OsWRKY45

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4663	26	67