PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00625.1.g00360.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 228aa MW: 24949.7 Da PI: 9.8278

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00625.1.g00360.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.8	9.3e-09	94	120	3	29
HHHHHHHHHHHHHHHHHHHHHHCTSCC CS HLH 3 rahnerErrRRdriNsafeeLrellPk 29 ++h ++ErrRR+++N+++ Lr+++Pk Zmw_sc00625.1.g00360.1.am.mk 94 AKHTMVERRRRKKLNDRLYMLRSVVPK 120 58************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.57E-8	89	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.718	91	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.31E-7	93	126	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.2E-9	94	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.2E-6	94	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MDEGNSSAPP PTTMDAIWPD GMAGDSFPAF PFPSDILFFP FVPMGLNEDD EINQPLDARS 60 MGVKASLENA AGAAAAEGGV GAGGSGTDKK GMQAKHTMVE RRRRKKLNDR LYMLRSVVPK 120 ITKIEVRMTE GEAVNIRMFC ARKPGILPSI VWALDRLGLD VQQGVISSFD KFVMDIFRAE 180 VQKAYNQHYG RRQRPRLGAA SLLCRAPAWA GLAQDSRRMR LDLHGGSA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	106	ERRRRKKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021673396.1	3e-41	transcription factor ICE1-like isoform X2

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP70681	2	2