PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00626.1.g00140.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 210aa    MW: 23246.5 Da    PI: 9.6094
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00626.1.g00140.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.7e-18107154148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +grWT+eEde+l++++k++G g+W++ ++  g+ R++k+c++rw +yl
  Zmw_sc00626.1.g00140.1.sm.mk 107 KGRWTKEEDEILARYIKEHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 154
                                   79******************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-2398157IPR009057Homeodomain-like
PROSITE profilePS5129422.842102158IPR017930Myb domain
SMARTSM007171.0E-13106156IPR001005SANT/Myb domain
PfamPF002491.1E-16107154IPR001005SANT/Myb domain
SuperFamilySSF466895.43E-22108181IPR009057Homeodomain-like
CDDcd001673.45E-13109154No hitNo description
Gene3DG3DSA:1.10.10.608.6E-8158181IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MQPENGDYPF APTHPHLSVP NNATVVFSPP NCAVRIFTQE PDPTSSSSQL SVPLSLCRAQ  60
AHKKPQLFAV GSGDPSSSSL NLSSSPFSLK QRGMGRAPCC EKVGLKKGRW TKEEDEILAR  120
YIKEHGEGSW RSLPKNAGLL RCGKSCRLRW INYLRADLKR GNISEEEDEM IMKLHATLGN  180
RESNTSFAFS MKTSGKTQTL VHRCPLPFST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-13105181580B-MYB
Search in ModeBase
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448