PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00637.1.g00340.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 415aa    MW: 45462.5 Da    PI: 5.6506
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00637.1.g00340.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS327.82.1e-10010541085374
                          GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerL 165
                                   ++++P+l+++  +aNq +le +e e+ vH++D++    +QW+ Ll+ +a+Rpegpp+lR+Tgv++    ++e l +t+  L
  Zmw_sc00637.1.g00340.1.am.mk 105 VDLCPFLRLAGAAANQSVLEVMEAEKVVHVVDLGGADATQWLELLHLFAARPEGPPHLRLTGVSE----HREILTQTAMVL 181
                                   689**************************************************************....9*********** PP

                          GRAS 166 akfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll.....................desvsleserd 225
                                   +k Ae+l+vpf+fn+ v++rl++l++e+Lrvk+gEala+ ++lqlh ll                     +   +++s+ d
  Zmw_sc00637.1.g00340.1.am.mk 182 SKEAERLDVPFQFNP-VVTRLDTLDVESLRVKTGEALAITSSLQLHCLLasdddsaavvgkdkdsrrspeSGLSPSTSRVD 261
                                   ***************.79***********************************************9997522233444799 PP

                          GRAS 226 evLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerr 306
                                   ++L ++++lsPk+vvv+eqea+hn++ + erf+eal+yy+alfd+le+ ++r s er+ vEr +lg+ei+n+vac gaerr
  Zmw_sc00637.1.g00340.1.am.mk 262 AFLGALWGLSPKIVVVTEQEASHNAPALTERFVEALNYYAALFDCLEVVAARGSVERARVERWMLGEEIKNIVACDGAERR 342
                                   ********************************************************************************* PP

                          GRAS 307 erhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                   erhe+l++W +r+e aGF+ vpls++a  qa++  +  + dg++v ee+gs++l+W+dr+++svSaWr
  Zmw_sc00637.1.g00340.1.am.mk 343 ERHERLGRWARRMEGAGFGRVPLSYYALLQARRAAQGLGCDGFKVREEKGSFFLCWQDRAIFSVSAWR 410
                                   *******************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.871390IPR005202Transcription factor GRAS
PfamPF035147.4E-98105410IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MVQYDEGSSS SVTSSPLRNF SSMPLHPAAA SPTPPWLLRD LRSDERGLIL IHLLLNGAAA  60
ASAGRLDAVD AALEHIVALA APDGDAMXXX XXXXXXXXXX XXXXVDLCPF LRLAGAAANQ  120
SVLEVMEAEK VVHVVDLGGA DATQWLELLH LFAARPEGPP HLRLTGVSEH REILTQTAMV  180
LSKEAERLDV PFQFNPVVTR LDTLDVESLR VKTGEALAIT SSLQLHCLLA SDDDSAAVVG  240
KDKDSRRSPE SGLSPSTSRV DAFLGALWGL SPKIVVVTEQ EASHNAPALT ERFVEALNYY  300
AALFDCLEVV AARGSVERAR VERWMLGEEI KNIVACDGAE RRERHERLGR WARRMEGAGF  360
GRVPLSYYAL LQARRAAQGL GCDGFKVREE KGSFFLCWQD RAIFSVSAWR GRRID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-48107412105381Protein SCARECROW
5b3h_A4e-48107412104380Protein SCARECROW
5b3h_D4e-48107412104380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819415.10.0scarecrow-like protein 3
RefseqXP_025819416.10.0scarecrow-like protein 3
SwissprotQ9LPR81e-142SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2S3HN370.0A0A2S3HN37_9POAL; Uncharacterized protein
TrEMBLA0A2T7DBR70.0A0A2T7DBR7_9POAL; Uncharacterized protein
STRINGSb03g045660.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]