PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00638.1.g00200.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 245aa MW: 26841.1 Da PI: 4.7515

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00638.1.g00200.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.9	1.5e-10	2	31	18	48
HTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 18 qlGggtWktIartmgkgRtlkqcksrwqkyl 48 ql + +W++Ia++++ gRt++++k++w+++l Zmw_sc00638.1.g00200.1.am.mk 2 QLDKTRWSAIAKHLP-GRTDNEIKNFWNTHL 31 677778*******.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.967	1	35	IPR017930	Myb domain
CDD	cd00167	6.17E-9	2	31	No hit	No description
Pfam	PF00249	1.4E-8	5	31	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.18E-9	5	40	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.0E-14	6	32	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MQLDKTRWSA IAKHLPGRTD NEIKNFWNTH LKKKLIQMGF DPMTHRPRTD FFAALPQLIA 60 LANLRQLVEQ RPWDDHTARL QAEAAQAAKL QYLQSLLQSA ASIATSPSSS SMNTIPGDMD 120 QIGLLSPQQM SSLSSLPSPS LLESISGQDI VAGQVPDIQM PSSYFELPVS NDANRNTEHT 180 AKGIVEGDHS TSKTLLMSEN SLPPLADFPI SNLGDACSTS SCGGNNTEFP GWPELFDEQF 240 LSEFA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004953959.1	1e-132	transcription factor MYB16
TrEMBL	A0A368PSI8	1e-129	A0A368PSI8_SETIT; Uncharacterized protein
TrEMBL	K3YU39	1e-130	K3YU39_SETIT; Uncharacterized protein
STRING	Si017785m	1e-131	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1126	37	132